PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G24320.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 504aa MW: 53914.3 Da PI: 8.4954 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.3 | 1.4e-40 | 210 | 286 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC++dls+ +eyhr+hkvCe+hskap+v+vsgle+rfCqqCsrfh l efD++k+sCrrrL++hn+rrrk+q+ OPUNC06G24320.2 210 CQVEGCKVDLSSSREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQ 286 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-32 | 202 | 271 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.3 | 207 | 284 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.14E-38 | 209 | 289 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.7E-31 | 210 | 283 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MAIVFIQVEY NGDNDSLSAK GAAVEILNSV MASFGMNWNQ KSPVFWDWEN PAPFGPNTME 60 NPKSIPHPEP RGVVVGAANH GSTNSSGGTF TSSSELANGS SKSSLSASFD SSSKLGNSLE 120 FRFASVKGHG KNMCKDGEAG RVEDSGTSPA VAVSHGEPVI GLKLGKRTYF ENVCGGQNVK 180 SSSAASAVTC PSTVVKKMKV SQQSTQSSYC QVEGCKVDLS SSREYHRKHK VCEAHSKAPK 240 VIVSGLERRF CQQCSRFHGL AEFDQKKKSC RRRLSDHNAR RRKPQQEAIS FGSSRLASMF 300 YDARQQTDIY FGQSPFGQVR SNAISSCDNL GGFKFTEAKL PWMKPMKTIG LEDLHFSTVQ 360 MPNNVVAHTV HHHDFDGLIP FKGNTTKVLN QGVDPACAVV SSNSNGAPDL RRALSLLSSD 420 SWGPADVQAG SQVHPGGVMP LLAVAATVTA PTNSVSVMHA LHPSPGGGGF WQDDDDPAPL 480 DHGVQAQAFM HLGNGSNSGF GNLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-27 | 210 | 283 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 265 | 282 | KKKSCRRRLSDHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073179 | 0.0 | AK073179.1 Oryza sativa Japonica Group cDNA clone:J033004F21, full insert sequence. | |||
GenBank | AK102136 | 0.0 | AK102136.1 Oryza sativa Japonica Group cDNA clone:J033085H14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643448.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643450.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643451.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643452.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643454.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643455.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643456.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643457.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643458.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643459.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643461.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_025882366.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_025882367.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Swissprot | A2YGR5 | 0.0 | SPL12_ORYSI; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A0E0LFC8 | 0.0 | A0A0E0LFC8_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G24320.2 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3697 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 2e-50 | squamosa promoter binding protein-like 10 |