PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G23830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 336aa MW: 36126.8 Da PI: 4.9203 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.7 | 2.5e-16 | 253 | 289 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg Tp++Rrgpdg++tLCnaCGl+++ kg+ OPUNC06G23830.1 253 CHHCGINAkaTPMMRRGPDGPRTLCNACGLMWANKGM 289 ****977777***********************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.975 | 117 | 152 | IPR010399 | Tify domain |
SMART | SM00979 | 5.9E-11 | 117 | 152 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.8E-13 | 120 | 151 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.404 | 178 | 220 | IPR010402 | CCT domain |
Pfam | PF06203 | 7.7E-16 | 178 | 220 | IPR010402 | CCT domain |
SMART | SM00401 | 1.5E-11 | 247 | 300 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.091 | 247 | 295 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.28E-12 | 251 | 310 | No hit | No description |
CDD | cd00202 | 4.75E-14 | 252 | 302 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-15 | 252 | 294 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 253 | 280 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 8.0E-14 | 253 | 288 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MSHHDGSKPY QPRRGPERPP PPAPAEDAAA HAAPTVDHLA AVAAEAEAMA RYEEEHGVLA 60 HGQEAEDEEE DDLEEEEVME EDEEDGDAHH HEGDAEEAVP MDAQLDPHGG MVAAAVQPMA 120 SNQLTLSFQG EVYVFDSVSP DKVQAVLLLL GGRELNPGLG SGASSSAPYS KRLNFPHRVA 180 SLMRFREKRK ERNFDKKIRY SVRKEVALRM QRNRGQFTSS KPKGDEATSE LTASDGSPNW 240 GSVEGRPPSA AECHHCGINA KATPMMRRGP DGPRTLCNAC GLMWANKGML RDLSKAPPTP 300 IQVVASVNDG NGSAAAHTTE QEIPAPATAN GHESST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243334 | 0.0 | AK243334.1 Oryza sativa Japonica Group cDNA, clone: J100058P16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882282.1 | 0.0 | GATA transcription factor 20 | ||||
Swissprot | Q5Z4U5 | 0.0 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
TrEMBL | A0A0E0LF62 | 0.0 | A0A0E0LF62_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G23830.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4325 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 1e-74 | ZIM-LIKE 2 |