PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G22960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 695aa MW: 75554 Da PI: 7.8977 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76 | 4.4e-24 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+ ++ OPUNC06G22960.1 127 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--RT 216 89****************************996555555..8999*********************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++ l+v+++r+ OPUNC06G22960.1 217 ENGDLCVGIRRA 228 88999****997 PP | |||||||
2 | Auxin_resp | 111.4 | 8.8e-37 | 287 | 370 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a +++FevvY+Prast+eF+vk+ v++a+++++ +GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ OPUNC06G22960.1 287 AANLAVGGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 370 67888899**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-37 | 118 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.42E-29 | 123 | 228 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.32E-21 | 126 | 227 | No hit | No description |
Pfam | PF02362 | 2.4E-22 | 127 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.999 | 127 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-21 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.9E-32 | 287 | 370 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 24.401 | 609 | 692 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MITFVDSAAK ERERENDKCL DPQLWHACAG GMVQMPPVNS KVYYFPQGHA EHAQGHGPVE 60 FPAGRVPALV LCRVAGVRFM ADPDTDEVFA KIRLVPVRAN EQGYAADADD GIGAAAAAAQ 120 EEKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTVLAK DVHGVVWKFR 180 HIYRGTPRRH LLTTGWSTFV NQKKLVAGDS IVFMRTENGD LCVGIRRAKK GGVGGPEYLP 240 PPPPSPAGGN YGGFSMFLRG DDDNNKMAAA ARGKVRARVR PEEVVEAANL AVGGQPFEVV 300 YYPRASTPEF CVKAGAVRAA MRTQWFAGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR 360 WPNSPWRLLQ VSWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LAPFSPPRKK LCVPLYPELP 420 IDGQFPTPMF HGNPLARGVG PMCYFPDGTP AGIQGARHAQ FGISLSDLHL NKLQSSLSPH 480 GLHQLDHGMQ PRIAAGLIIG HPAARDDISC LLTIGSPQNK KKSDGKKAPA QLMLFGKPIL 540 TEQQISLGDA APVAVKKSSS DGNAENTVNK SNSDVSSPRS NQNGTTDNLS CGGIPLCQDN 600 KVLDVGLETG HCKVFMQSED VGRTLDLSVV GSYEELYRRL ADMFGIEKAE LMSHVFYRDA 660 AGALKHTGDE PFSEFTKTAR RLNILTDTSG DNLAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 9e-80 | 20 | 391 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100322 | 0.0 | AK100322.1 Oryza sativa Japonica Group cDNA clone:J023079H12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644137.1 | 0.0 | auxin response factor 18 | ||||
Refseq | XP_015644138.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A0E0LEV4 | 0.0 | A0A0E0LEV4_ORYPU; Auxin response factor | ||||
STRING | OPUNC06G22960.3 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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