PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G21970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 335aa MW: 35534.1 Da PI: 7.2363 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.2 | 7.8e-13 | 76 | 120 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I +++g +t q++s+ qky OPUNC06G21970.1 76 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 120 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.36E-16 | 70 | 126 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.628 | 71 | 125 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.2E-18 | 74 | 123 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 8.1E-6 | 75 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-10 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-10 | 76 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.46E-8 | 78 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MSTTPNPLDA AAGSAVAGGG GGGDGGGGGG GGRKQKEKQV VAAPLQPPMA VPAASAVAVG 60 EEARKVRKPY TITKSRESWT EPEHDKFLEA LQLFDRDWKK IEAYVGSKTV IQIRSHAQKY 120 FLKVQKNGTG EHLPPPRPKR KAAHPYPQKA SKNVSQAAIS QPPPLGEQGC VMSMDTSPVI 180 RNANASAAVP SWDNSIAQPL SASHTQGAVA TNNCSSSIES PSATWPTSEA VEQENVLRPL 240 RAMPDFAQVY SFLGSIFDPD TSGHLQTLKA MDPIDVETVL LLMRNLSMNL TSPDFAPHLN 300 LLSSCNSGGD QIKSEGMENL GSPQSCHLPF MVTSE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070871 | 0.0 | AK070871.1 Oryza sativa Japonica Group cDNA clone:J023073K02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006656360.1 | 0.0 | PREDICTED: protein REVEILLE 6-like isoform X4 | ||||
Swissprot | Q8H0W3 | 2e-96 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A0E0LEH8 | 0.0 | A0A0E0LEH8_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G21970.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1096 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 4e-84 | MYB_related family protein |
Publications ? help Back to Top | |||
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