PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G21840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 241aa MW: 27167.8 Da PI: 5.2259 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.1 | 8.5e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ ++rqv+fskRr+g+lKKA+EL vLCda+v v++fs +gkl++++s OPUNC06G21840.1 9 KRIEDATRRQVSFSKRRAGLLKKAHELAVLCDAQVGVVVFSDKGKLFDFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 55.5 | 2.4e-19 | 83 | 171 | 9 | 95 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslke..LqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 +++++ e++ e+++L++e+++L+ ++R+ GedL+ + L qL+ qLe++l+k+R++K+el+++q+e+++++++ ++e+n+ L OPUNC06G21840.1 83 KANRDDEQMLMEITRLRSENDQLEASLRRQTGEDLSCVATVDdgLSQLQLQLESALSKVRERKDELMRQQLEDMRRMQQTVHEQNNFLC 171 4566778999***************************9987667******************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.0E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.74 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.58E-39 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 2.49E-28 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.8E-17 | 86 | 173 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.8 | 88 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008360 | Biological Process | regulation of cell shape | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGRGKIEIKR IEDATRRQVS FSKRRAGLLK KAHELAVLCD AQVGVVVFSD KGKLFDFCSK 60 PVSLMELIHR YEITTAGNNR LQKANRDDEQ MLMEITRLRS ENDQLEASLR RQTGEDLSCV 120 ATVDDGLSQL QLQLESALSK VRERKDELMR QQLEDMRRMQ QTVHEQNNFL CLMMSENWTS 180 PASGEASAME ALTVLPAATA AAEAEAFGHN CFFPEEEGVA ASSTALQLWP HDGDQPNLRL 240 W |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-16 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 1e-16 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 1e-16 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 1e-16 | 1 | 59 | 1 | 59 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY174093 | 0.0 | AY174093.1 Oryza sativa (japonica cultivar-group) MADS30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882176.1 | 8e-96 | MADS-box transcription factor 30 isoform X6 | ||||
Refseq | XP_025882177.1 | 4e-97 | MADS-box transcription factor 30 isoform X7 | ||||
Swissprot | Q655V4 | 1e-98 | MAD30_ORYSJ; MADS-box transcription factor 30 | ||||
TrEMBL | A0A0E0LEG2 | 1e-178 | A0A0E0LEG2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G21840.1 | 1e-179 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1850 | 37 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 5e-40 | MIKC_MADS family protein |