PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC06G20470.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 318aa MW: 34653.7 Da PI: 6.323 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.2 | 1.2e-07 | 255 | 288 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + OPUNC06G20470.2 255 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 288 569*****************************87 PP | |||||||
2 | ELK | 29.3 | 1.9e-10 | 209 | 230 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ OPUNC06G20470.2 209 ELKHELKQGYREKLVDIREEIL 230 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.6E-19 | 43 | 87 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.5E-16 | 46 | 83 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.1E-25 | 98 | 153 | IPR005541 | KNOX2 |
Pfam | PF03791 | 6.6E-17 | 106 | 152 | IPR005541 | KNOX2 |
Pfam | PF03789 | 2.9E-6 | 209 | 230 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0014 | 209 | 230 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.196 | 209 | 229 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.596 | 229 | 292 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-10 | 231 | 296 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-16 | 231 | 295 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.87E-11 | 232 | 293 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 236 | 293 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.4E-18 | 249 | 288 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 318 aa Download sequence Send to blast |
MAFHYQDHSL AMDAAAAAAA AAETGHHHPG FGTGGVGGGG GWEREKAAIA AHPLYERLLE 60 AHVACLRVAT PVDQLPRIDA QIAARPPPLA AAAAAAAAGG APSGGEELDL FMTHYVLLLC 120 SFKEQLQQHV RVHAMEAVMA CWELEQTLQS LTGASPGEGS GATMSDDEDN QVDSESNMFD 180 GNDGSDGMGF GPLMLTEGER SLVERVRQEL KHELKQGYRE KLVDIREEIL RKRRAGKLPG 240 DTASTLKAWW QAHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW HSNPASSSSD 300 KSKRKRSNAG DGKAEQSW |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 285 | 305 | RKRNWHSNPASSSSDKSKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK241438 | 0.0 | AK241438.1 Oryza sativa Japonica Group cDNA, clone: J065162G03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965737.1 | 0.0 | homeobox protein knotted-1-like 11 isoform X1 | ||||
Swissprot | Q94LW4 | 1e-179 | KNOSB_ORYSJ; Homeobox protein knotted-1-like 11 | ||||
TrEMBL | A0A0E0LDZ6 | 0.0 | A0A0E0LDZ6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G20470.1 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-143 | KNOTTED1-like homeobox gene 3 |