PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G20470.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 322aa    MW: 35129.4 Da    PI: 6.345
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G20470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.11.2e-072552882154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  OPUNC06G20470.1 255 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 288
                      569*****************************87 PP
2ELK29.31.9e-10209230122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++L+++++E++
  OPUNC06G20470.1 209 ELKHELKQGYREKLVDIREEIL 230
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-194387IPR005540KNOX1
PfamPF037901.6E-164683IPR005540KNOX1
SMARTSM012561.1E-2598153IPR005541KNOX2
PfamPF037916.7E-17106152IPR005541KNOX2
PfamPF037893.0E-6209230IPR005539ELK domain
SMARTSM011880.0014209230IPR005539ELK domain
PROSITE profilePS5121310.196209229IPR005539ELK domain
PROSITE profilePS5007111.596229292IPR001356Homeobox domain
SMARTSM003893.3E-10231296IPR001356Homeobox domain
SuperFamilySSF466891.11E-15231296IPR009057Homeodomain-like
CDDcd000863.29E-11232293No hitNo description
Gene3DG3DSA:1.10.10.602.5E-24236293IPR009057Homeodomain-like
PfamPF059203.5E-18249288IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAFHYQDHSL AMDAAAAAAA AAETGHHHPG FGTGGVGGGG GWEREKAAIA AHPLYERLLE  60
AHVACLRVAT PVDQLPRIDA QIAARPPPLA AAAAAAAAGG APSGGEELDL FMTHYVLLLC  120
SFKEQLQQHV RVHAMEAVMA CWELEQTLQS LTGASPGEGS GATMSDDEDN QVDSESNMFD  180
GNDGSDGMGF GPLMLTEGER SLVERVRQEL KHELKQGYRE KLVDIREEIL RKRRAGKLPG  240
DTASTLKAWW QAHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW HSNPASSSSD  300
KSKRKSWDVL AVSVQHGTTM HL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0618180.0AB061818.1 Oryza sativa Japonica Group HOS59 mRNA for KNOX family class 2 homeodomain protein, complete cds.
GenBankAK2414380.0AK241438.1 Oryza sativa Japonica Group cDNA, clone: J065162G03, full insert sequence.
GenBankAK2891770.0AK289177.1 Oryza sativa Japonica Group cDNA, clone: J100024E07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965738.11e-176homeobox protein knotted-1-like 11 isoform X2
SwissprotQ94LW41e-171KNOSB_ORYSJ; Homeobox protein knotted-1-like 11
TrEMBLA0A0E0LDZ50.0A0A0E0LDZ5_ORYPU; Uncharacterized protein
STRINGOPUNC06G20470.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-142KNOTTED1-like homeobox gene 3