PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G19990.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 439aa    MW: 47509.2 Da    PI: 8.717
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G19990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.4e-18114163155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  OPUNC06G19990.1 114 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 163
                      78*******************......55************************997 PP
2AP240.57e-13206254153
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                      s+++GV+ +k  g+W+A+I         +k+++lg ++t+ eAaka+++a+ k 
  OPUNC06G19990.1 206 SRFRGVTLHK-CGKWEARIGQlM----GKKYIYLGLYDTEMEAAKAYDKAAIKC 254
                      789*******.7******77733....25**********77*********9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-10114163IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-15114172IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-17115171IPR001471AP2/ERF domain
SMARTSM003801.7E-31115177IPR001471AP2/ERF domain
PROSITE profilePS5103217.688115171IPR001471AP2/ERF domain
PfamPF008471.5E-8206256IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-17206265IPR016177DNA-binding domain
CDDcd000181.84E-23206266No hitNo description
PROSITE profilePS5103214.921207264IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-17207265IPR001471AP2/ERF domain
SMARTSM003803.1E-30207270IPR001471AP2/ERF domain
PRINTSPR003672.3E-5208219IPR001471AP2/ERF domain
PRINTSPR003672.3E-5246266IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAATKRAFFG VGGGIALPMH EDDEVEEEEM EEGSGRVFGF AAPAAGDLVR PAVVTQQFFP  60
MTAAAVVPEA TEQRLVAMEQ CHVAVAGAAA AAGAEQWARP PSRKTRRGPR SRSSQYRGVT  120
FYRRTGRWES HIWDCGKQVY LGGFDTAQAA ARAYDQAAIK FRGVEADINF TLDDYKEDIK  180
KMNNFSKEEF VQVLRRQGAG FVRGSSRFRG VTLHKCGKWE ARIGQLMGKK YIYLGLYDTE  240
MEAAKAYDKA AIKCCGREAV TNFDTQALGC SGGERAACDP AAVEVLHSAP SNQRTSLTFM  300
LPEEEETTAC HRQRSIWARP SLAPAMPDGG AVIRPDHHHH PSSRNMLLMS QVISSGGGGG  360
RQGAAELHMR PRHGWPNGGN NWAPYAARPR LPDADDDDSA AAASSGFPMS QVATASSSSR  420
PSSSSRSRSR SSTATATGR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429570.0AK242957.1 Oryza sativa Japonica Group cDNA, clone: J090089I15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642711.10.0ethylene-responsive transcription factor RAP2-7
SwissprotA0A0N7KMH00.0AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A0E0LDU10.0A0A0E0LDU1_ORYPU; Uncharacterized protein
STRINGOPUNC06G19990.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-81AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]