PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G19910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 307aa    MW: 33056.1 Da    PI: 8.0957
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G19910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.21e-191257147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W++eEde l ++v+++G ++W++I r+++ gR++k+c++rw + 
  OPUNC06G19910.1 12 RGPWSPEEDEALRRLVERHGARNWTAIGREIP-GRSGKSCRLRWCNQ 57
                     89******************************.***********985 PP

2Myb_DNA-binding54.33.1e-1764106145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r ++T+eEd  +++a++qlG++ W++Iar ++ gRt++ +k++w+
  OPUNC06G19910.1  64 RRPFTAEEDATILRAHAQLGNR-WAAIARLLQ-GRTDNAVKNHWN 106
                      679*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.746762IPR017930Myb domain
SuperFamilySSF466893.0E-319105IPR009057Homeodomain-like
SMARTSM007172.2E-171160IPR001005SANT/Myb domain
PfamPF002498.5E-191257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-261365IPR009057Homeodomain-like
CDDcd001671.94E-161456No hitNo description
SMARTSM007172.7E-1563111IPR001005SANT/Myb domain
PROSITE profilePS5129419.91864113IPR017930Myb domain
PfamPF002491.2E-1464106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-2366113IPR009057Homeodomain-like
CDDcd001671.35E-1166106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGGVEADCDR IRGPWSPEED EALRRLVERH GARNWTAIGR EIPGRSGKSC RLRWCNQLSP  60
QVERRPFTAE EDATILRAHA QLGNRWAAIA RLLQGRTDNA VKNHWNCSLK RKLAVATTTG  120
AAATGVVADA AEVVERPCKR FSPTPDSPSG SGSGSDRSDL SHGVGSGGFG QIFRPVARTG  180
AFEPVDCAIS RRQEEDPLTS LSLSLPGMDQ RFNHDSAHSH FQELPSSPSP PPPPPPSAAA  240
GAPRTQYPFT PEFAAAMQEM IRSEVHKYMA SVGVRAGCGD AGGADLHMPQ LVEGVMRAAA  300
ERVGRMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-3891134108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00400DAPTransfer from AT3G50060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBankCT8339180.0CT833918.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN042F17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641187.11e-170transcription factor MYB77
TrEMBLA0A0E0LDT20.0A0A0E0LDT2_ORYPU; Uncharacterized protein
STRINGOPUNC06G19910.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.16e-61myb domain protein 73