PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G19910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 33056.1 Da PI: 8.0957 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.2 | 1e-19 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEde l ++v+++G ++W++I r+++ gR++k+c++rw + OPUNC06G19910.1 12 RGPWSPEEDEALRRLVERHGARNWTAIGREIP-GRSGKSCRLRWCNQ 57 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.1e-17 | 64 | 106 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r ++T+eEd +++a++qlG++ W++Iar ++ gRt++ +k++w+ OPUNC06G19910.1 64 RRPFTAEEDATILRAHAQLGNR-WAAIARLLQ-GRTDNAVKNHWN 106 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.746 | 7 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.0E-31 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-17 | 11 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-19 | 12 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-26 | 13 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.94E-16 | 14 | 56 | No hit | No description |
SMART | SM00717 | 2.7E-15 | 63 | 111 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.918 | 64 | 113 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.2E-14 | 64 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-23 | 66 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.35E-11 | 66 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MGGVEADCDR IRGPWSPEED EALRRLVERH GARNWTAIGR EIPGRSGKSC RLRWCNQLSP 60 QVERRPFTAE EDATILRAHA QLGNRWAAIA RLLQGRTDNA VKNHWNCSLK RKLAVATTTG 120 AAATGVVADA AEVVERPCKR FSPTPDSPSG SGSGSDRSDL SHGVGSGGFG QIFRPVARTG 180 AFEPVDCAIS RRQEEDPLTS LSLSLPGMDQ RFNHDSAHSH FQELPSSPSP PPPPPPSAAA 240 GAPRTQYPFT PEFAAAMQEM IRSEVHKYMA SVGVRAGCGD AGGADLHMPQ LVEGVMRAAA 300 ERVGRMH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-38 | 9 | 113 | 4 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00400 | DAP | Transfer from AT3G50060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. | |||
GenBank | CT833918 | 0.0 | CT833918.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN042F17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641187.1 | 1e-170 | transcription factor MYB77 | ||||
TrEMBL | A0A0E0LDT2 | 0.0 | A0A0E0LDT2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G19910.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 6e-61 | myb domain protein 73 |