PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G17260.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 379aa    MW: 40355.8 Da    PI: 9.3405
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G17260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.5e-17199232134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  OPUNC06G17260.1 199 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 232
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-18193245IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-12193234No hitNo description
Gene3DG3DSA:3.30.50.101.9E-14197232IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.268197229IPR000679Zinc finger, GATA-type
CDDcd002022.23E-14198243No hitNo description
PfamPF003202.9E-15199232IPR000679Zinc finger, GATA-type
PROSITE patternPS003440199224IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MSTIYMSQLS SALPLMEGEH HHHHQDHHQG HFQAFSLQPK DPQILFPFMI SRSSSSSSPS  60
DTTTLSYGSD HHLTQQQHQA MLEPQHMIGG SSAGIFATPF PTVESIRDDM IERSPFDPYD  120
TEKLQASCGL AKVVAGGKWS VVPAAKMKIT RKMGEPSSSV TGGAATTAAL KKPRRRAQAY  180
EDHGHGGTMG QAFGVIRVCS DCNTTKTPLW RSGPCGPKSL CNACGIRQRK ARRAMMASGP  240
PASTNAGPKA DAQPKVKKEK RADVERSSLP FKKRCKVVQV QDQTTAAPTT TNAAAAMEET  300
AESATVAPPP APMTRGGTSL VDSIGLSWSK THPTATTTTA TASCSFRPSP VAPGFAAVQD  360
EITDAAMLLM TLSCGLVRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0698510.0AK069851.1 Oryza sativa Japonica Group cDNA clone:J023034D16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641328.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
RefseqXP_015641329.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
RefseqXP_025882362.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
TrEMBLA0A0E0LCV10.0A0A0E0LCV1_ORYPU; Uncharacterized protein
STRINGOPUNC06G17260.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-19GATA family protein