PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G16740.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 693aa    MW: 75980.2 Da    PI: 7.0857
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G16740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.45.6e-1051121163
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......leleev.ikev.diykvePwdLpkkvkaeekewyfFsk 63 
                      lp+G++F+Ptd+el+ e+L++kv+          ++++   i+   +i++++P++Lp++ ++ +  +  Fs 
  OPUNC06G16740.1  51 LPAGVKFDPTDQELI-EHLEAKVRPGGeaaahplIDEFIPtIEGEdGICYTHPEKLPASGQEVQATTAIFSA 121
                      799************.99*****988856665543333333766646**********543333334444544 PP
2NAM100.91.8e-311833611128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                      lp+G++F+Ptd+el+ e+L++kv+          ++++   i+   +i++++P++Lp  v+++  + +fF++ +k+y+tg+rk+r+        
  OPUNC06G16740.1 183 LPAGVKFDPTDQELI-EHLEAKVRPGGeaaahplIDEFIPtIEGEdGICYTHPEKLP-GVSKDGLSRHFFHRPSKAYTTGTRKRRKiqppaaas 274
                      799************.99*****988856665543333333766646**********.556667799******************88******* PP

              NAM  78 ...................................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                                          ++ +W++tgk+++v++ +g++ g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  OPUNC06G16740.1 275 gsgdassgggnasssssssaaarhghqqpaqqqqqRSETRWHKTGKTRPVVA-GGRQRGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 361
                      ******************************9998755789************.99************5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-945108IPR003441NAC domain
SuperFamilySSF1019414.97E-35177267IPR003441NAC domain
PROSITE profilePS5100526.204183380IPR003441NAC domain
PfamPF023653.9E-14184361IPR003441NAC domain
SuperFamilySSF1019414.97E-35315380IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MDGVVAEEAG GGGHCRLIGS RIEEHRKYMS EESCCPRCGH KIDRKLDWVG LPAGVKFDPT  60
DQELIEHLEA KVRPGGEAAA HPLIDEFIPT IEGEDGICYT HPEKLPASGQ EVQATTAIFS  120
ARGGRREAQV AAMDGVVAEE AGGGGHCRLI GSRIEEHRKY MSEESCCPRC GHKIDRKLDW  180
VGLPAGVKFD PTDQELIEHL EAKVRPGGEA AAHPLIDEFI PTIEGEDGIC YTHPEKLPGV  240
SKDGLSRHFF HRPSKAYTTG TRKRRKIQPP AAASGSGDAS SGGGNASSSS SSSAAARHGH  300
QQPAQQQQQR SETRWHKTGK TRPVVAGGRQ RGCKKILVLY TNFGKHRKPE KTNWVMHQYH  360
LGEAEEERDG ELVVSKIFYQ TQPRQCGAGD AAAASASASV VDRRTSERER AVAAAAAAAV  420
AAAAPMASAN VNAAAFHGGA AAGIDEFSFA QFRSSFEEAG MGASSSDHQS ARVDDEGALH  480
HHHHHRPHQQ QHDDEHDNRR GGGHHYVGQQ QSVAATFHVV SSPADPIARL IAPLPAHQGT  540
VMLRQPEPPY YHHQEDERPH QPRKFDGRST SGSGLEEVIM GCTSRRSKEG ETSGGKDGTE  600
WQYPSFWPSD SQDHHGDKDD IEAKQKGGTE KEKGEEKQSF SRYTFAKKYS MYKETLKISR  660
YAWLALVPKS SFFLRNIFNW FQKLLSGMHE ERE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037130.0AP003713.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0528E12.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641895.10.0NAC domain-containing protein 75 isoform X2
SwissprotQ9M0F81e-118NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0E0LCN10.0A0A0E0LCN1_ORYPU; Uncharacterized protein
STRINGOPUNC06G16740.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-99NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]