PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G13170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 211aa MW: 24044.2 Da PI: 8.9932 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.2 | 3.9e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rien++ rqvtfskRr g++KKA+EL +LCda+v v++fsstg+ly+ys+ OPUNC06G13170.1 9 SRIENTTSRQVTFSKRRSGLFKKAKELAILCDAQVGVLVFSSTGRLYDYSN 59 59***********************************************95 PP | |||||||
2 | K-box | 56 | 1.8e-19 | 60 | 147 | 12 | 98 |
K-box 12 akaeslqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + + s + ++++k+ + + ++ +ll +dL+ L+ ++L++Le+qLe+sl ++R kK++++ eqi+el+kke+ +++en++L++++ OPUNC06G13170.1 60 SSMRSVIERYQRIKDGQQLMSaSTEAKLLAQDLSGLEWNDLKSLENQLETSLHSVRLKKDQIMAEQIQELRKKENIMHQENMELHREF 147 55666778899999999999988889***********************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.8E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.987 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.06E-30 | 3 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.14E-39 | 3 | 77 | No hit | No description |
Pfam | PF00319 | 1.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.703 | 55 | 153 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.6E-17 | 70 | 147 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007584 | Biological Process | response to nutrient | ||||
GO:0010167 | Biological Process | response to nitrate | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MVRGKTVISR IENTTSRQVT FSKRRSGLFK KAKELAILCD AQVGVLVFSS TGRLYDYSNS 60 SMRSVIERYQ RIKDGQQLMS ASTEAKLLAQ DLSGLEWNDL KSLENQLETS LHSVRLKKDQ 120 IMAEQIQELR KKENIMHQEN MELHREFNML RQESVNLQRK LYGKQDVNGG QGSSVTQNAN 180 TPDDADEIRL ELSQPQLADE KPEAAELRKS G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-16 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 4e-16 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 4e-16 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 4e-16 | 1 | 69 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005646 | 9e-92 | AP005646.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1077E08. | |||
GenBank | AP014962 | 9e-92 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 9e-92 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641670.1 | 1e-135 | MADS-box transcription factor 23-like | ||||
Swissprot | Q6EP49 | 5e-62 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A0E0LBE3 | 1e-153 | A0A0E0LBE3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G13170.1 | 1e-154 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17073 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14210.1 | 1e-62 | AGAMOUS-like 44 |
Publications ? help Back to Top | |||
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