PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G12720.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 237aa    MW: 27021.9 Da    PI: 9.8955
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G12720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.51.5e-17957149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +ri+n+  rqv fskRr  ++KKA+EL + C+aeva+++ s+ g+++ +
  OPUNC06G12720.1  9 ERIKNEEARQVCFSKRRPNVFKKASELHTICGAEVAMVVKSPAGNFFSF 57
                     69*******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.909161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-20160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-23175IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-14323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-201057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MTKLKIEIER IKNEEARQVC FSKRRPNVFK KASELHTICG AEVAMVVKSP AGNFFSFGAP  60
SVGSVLSRFH ATTTRKHSTM GVRIQHDNSA TTKLHELNQQ YIELQNQLQA QNEKMKALQE  120
VAKKESGGKV MGWLDSKVEE LCQEDLEEFK MVLESLKYLT RGIINQHFQN YAMFSNMLRV  180
QHSVTALPNQ QFLLSSEDVK PIIHHVPSST YGWNTRIDSK PNSSDAHVVG TRRYFPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037630.0AP003763.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0531C01.
GenBankAP0047840.0AP004784.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0012F14.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642726.11e-160agamous-like MADS-box protein AGL61
TrEMBLA0A0E0LB911e-178A0A0E0LB91_ORYPU; Uncharacterized protein
STRINGOPUNC06G12720.11e-179(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169561112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-30AGAMOUS-like 62