PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G10540.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 290aa    MW: 29490.7 Da    PI: 6.8543
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G10540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.41.6e-382784461
           zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     ++++cprCds+ntkfCyynny+lsqPr+fCkaCrryWtkGG lrnvPvGgg+rk k+ 
  OPUNC06G10540.1 27 EEVRCPRCDSSNTKFCYYNNYNLSQPRHFCKACRRYWTKGGLLRNVPVGGGCRKPKRP 84
                     6789**************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027019.3E-332883IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0872983IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-263183IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103167IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MQEFHPVPGL AGRLFGGAAA VAAPVVEEVR CPRCDSSNTK FCYYNNYNLS QPRHFCKACR  60
RYWTKGGLLR NVPVGGGCRK PKRPASSSSV TDVHRAGHGG GCGHRDAKSA RSAGGEGSSA  120
SASATGTTPA VAPASNTLSA AVTQPSSVAT FVAADDALSP PPAPMFADQA TALASLFAPP  180
PPPPPPSQAL PAFTSFSAQP KAEEDVADAP ALAATEQQPS SAASFTAHNI SPPFTARSSD  240
GPAAAAAADW APPTAVLEAG MFDLAGAIGG DTSYWNAASW TDHDGTIYLP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047911e-129AP004791.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0491D10.
GenBankAP0149621e-129AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641761.11e-104dof zinc finger protein 4-like
TrEMBLA0A0E0LAH20.0A0A0E0LAH2_ORYPU; Uncharacterized protein
STRINGOPUNC06G10540.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64963050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.13e-32OBF binding protein 4