PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G10230.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 431aa    MW: 46654.8 Da    PI: 6.5541
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G10230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-09263311355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  OPUNC06G10230.1 263 NSHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 311
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-17258328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-10258315No hitNo description
PROSITE profilePS5088815.516260310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-17261325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6263311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-10266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MNEKDTTDLE ERSEASEHGQ ALSFHGGAMF LQEAQNPANA NALTAMANPF SIPPGLWNPP  60
SHNMGLGETS FSSLLGMLST GAPPATPGFV DSAVGFPCYN GGNFGAMINH SFPGTHLPSG  120
DFQNGIEPCR EIEAIEIEGC KNVPQTGEKQ QGDGETMHAV DSSSKELSMP GRNGGAGHDE  180
ETRVSCSKKR KRSGQDGGVK HAEGGEQFAT VGSAKKNEND EKGEPKRSSV ASGKSSGKQT  240
KDNAGSPKED YIHVRARRGQ ATNSHSLAER VRREKISERM KYLQDLVPGC SKVTGKAVML  300
DEIINYVQSL QRQVEFLSMK LASVNPTLDF NLERILSKDI FHSRGTTASP AFHFLPDIVH  360
PQLHPPKYTQ VGMASIVNST ESFGRVTHPP LGTNSAFKEP KHQIPNDLNG EFQDVIEMPF  420
THNHHGSNDQ T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187192KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1038530.0AK103853.1 Oryza sativa Japonica Group cDNA clone:J033148M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643533.10.0transcription factor bHLH49 isoform X2
RefseqXP_015643534.10.0transcription factor bHLH49 isoform X2
TrEMBLA0A0E0LAE10.0A0A0E0LAE1_ORYPU; Uncharacterized protein
STRINGOPUNC06G10230.30.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146241923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.35e-70bHLH family protein