PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G09140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-X1 | ||||||||
Protein Properties | Length: 956aa MW: 103230 Da PI: 7.9288 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 21.3 | 5.9e-07 | 226 | 243 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H Cq CH+GpC++C OPUNC06G09140.1 226 CGNHACQDVCHPGPCGEC 243 ****************** PP | |||||||
2 | zf-NF-X1 | 23 | 1.8e-07 | 284 | 301 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C+ +CHeG+CppC OPUNC06G09140.1 284 CGVHRCKVTCHEGDCPPC 301 ****************** PP | |||||||
3 | zf-NF-X1 | 16.6 | 1.7e-05 | 379 | 397 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H Cq lCH G CppC OPUNC06G09140.1 379 CGQHGCQLLCHSGHCPPCL 397 ******************6 PP | |||||||
4 | zf-NF-X1 | 17.2 | 1.1e-05 | 489 | 505 | 1 | 17 |
zf-NF-X1 1 CGkHkCqklCHeGpCpp 17 CG+H C + CH+ pC+p OPUNC06G09140.1 489 CGIHACTRSCHPSPCDP 505 ***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00438 | 0.023 | 107 | 125 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 7.1 | 109 | 124 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.06E-11 | 152 | 200 | No hit | No description |
Pfam | PF01422 | 0.014 | 162 | 179 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0019 | 162 | 181 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.61E-8 | 216 | 259 | No hit | No description |
Pfam | PF01422 | 6.1E-5 | 226 | 243 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 2.0E-4 | 226 | 245 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.76E-12 | 274 | 322 | No hit | No description |
Pfam | PF01422 | 4.7E-6 | 284 | 301 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.001 | 284 | 303 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.87E-8 | 369 | 421 | No hit | No description |
Pfam | PF01422 | 0.0014 | 379 | 396 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 7.2E-4 | 379 | 398 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.62 | 436 | 454 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0058 | 489 | 505 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.02 | 489 | 524 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 7.7 | 526 | 552 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.16 | 533 | 554 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01424 | 2.1E-4 | 662 | 728 | IPR001374 | R3H domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 956 aa Download sequence Send to blast |
MVRRSAPVWS CGSCFSIFHL PCIRKWARSP ASAADASDPD SSWRCPGCQS VHAVPARELA 60 YTCFCGRRRE PPNDLFLTPH SCGEPCSKPL EKADPAAKGD DAAATRCPHV CVLQCHPGPC 120 PPCKAFAPDR LCPCGKQTIV RRCADRTTPV TCGQRCDRLL PCRRHRCEKV CHTGPCGDCN 180 VLISARCFCG KKTETLLCGE MELKGNLSEK DGVFSCSEAC SHMLTCGNHA CQDVCHPGPC 240 GECELMPGMV TTCHCGKTRL LEKRASCLDP IPTCDKVCDK KLPCGVHRCK VTCHEGDCPP 300 CVVRVEQRCR CSSSGQMVEC YKVLEEEFRC NKPCGRKKNC GRHRCSECCC PLSKPLAQLE 360 AGNWDPHLCQ IPCGKKLRCG QHGCQLLCHS GHCPPCLETI FNDLTCACGR TSIPPPLPCG 420 TPTPSCPHQC LVPQPCGHPA THQCHFGDCP PCVVPVMREC IGGHVVLRNI PCGSKDIRCN 480 QPCGKNRQCG IHACTRSCHP SPCDPPSANV DASSSIGGRA SCGQVCGAPR RECKHTCTAP 540 CHPSSPCPDL RCEFPVTIAC SCGRITATVP CGAGGTANGD NMFEVSIIQK LPMPLQPVES 600 DGRRVPLGQR KLSCDEDCAK MERKRVLAEA FDITPPNLDA LHFGENSNAS DLLSDLFRRE 660 PKWVLAIEER CKFLVLGKTR GNSSGNLKVH VFCHMTKDKR DAIRVIADRW KLSVQAAGWE 720 PKRFITIHPT PKSKPPARIL GSKPGVSVTA SHPFFDPMVD MDPRLVVAML DLPRDADVSA 780 LVLRFGGECE LVWLNDKNAV AVFNDPARAA TALRRLDYGS AYQGAAVFLP SSSAQPGNVW 840 VAGQKDGVAA TKSSANPWKK ATPSEPDSSS GDWTGVLGQA PPSVWRRGGD TVAQVMGTSN 900 RWNALESDAA TSSRPVEESK LAARTVAGST AGPSSVPPVS KMQPEVEVDD WEEACE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005518 | 0.0 | AP005518.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0046H10. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643844.1 | 0.0 | NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A0E0LA09 | 0.0 | A0A0E0LA09_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G09140.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6130 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |