PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC06G07980.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-PHD

Protein Properties

Length: 913aa MW: 100817 Da PI: 5.6273

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC06G07980.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.9	1.1e-10	742	782	12	52
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + L+ +F++++yps++++e LA++lgLt +qV+ WF R OPUNC06G07980.1 742 NQKLKVHFKEDPYPSRATKENLAQELGLTFNQVTKWFSSTR 782 578999*******************************8776 PP
2	PHD	44	5e-15	358	413	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+vCg+ + +++++lCdg C++ fH++Cl+++l e++p+g wlC+ C++k OPUNC06G07980.1 358 FCAVCGSkdVTLKNDIILCDGiCDRGFHQYCLNPPLLAEDIPQGdeGWLCPACDCK 413 7****64445****88*****************999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	5.32E-15	348	416	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	2.3E-14	354	412	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	11.11	356	413	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	4.1E-11	358	411	IPR001965	Zinc finger, PHD-type
CDD	cd15504	4.73E-26	358	410	No hit	No description
Pfam	PF00628	2.7E-12	358	413	IPR019787	Zinc finger, PHD-finger
PROSITE pattern	PS01359	0	359	410	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE profile	PS50071	12.892	728	788	IPR001356	Homeobox domain
SMART	SM00389	3.4E-11	731	792	IPR001356	Homeobox domain
CDD	cd00086	2.30E-11	733	786	No hit	No description
SuperFamily	SSF46689	1.37E-10	734	795	IPR009057	Homeodomain-like
Pfam	PF00046	4.0E-8	742	782	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.9E-11	742	797	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence Send to blast
MAMPTGGAQS DLYGAEFAGE RVWGEVGVTR PRRRRGAERR LRRRRTAEAA PSFLPCVFPP 60 FSSQPRPRRP RAAADGGARR RRRRTAAEAA EDERDNGGCP RRRLTAVKAI ICMDKTTNSD 120 LILDNDNNGS NAGSAQEPLT ANGKTSGVRN RYKQTVKRGR KGPQISPSKT YPLRSSHSNV 180 RVLRSASKKK NETPIVPTND NTSVQRVVKK RKRTKPLRPA PSRVLRSASE KKNKAHNELL 240 NDGAGVQPAG KKRKVGRPPK EGTPKDDYLI IRKRVRYILN RMNYEQSLIQ AYASEGWKGQ 300 SLEKIRPEKE LERAKVEILR CKSRIREAFQ NLDSLLSEGK LDESMFDSAG EISSEDIFCA 360 VCGSKDVTLK NDIILCDGIC DRGFHQYCLN PPLLAEDIPQ GDEGWLCPAC DCKIDCIDVL 420 NELQEVKLSI HDSWEKVFPE AASFSNGSKQ IDASDLPSDD SADNDYDPAL AQGHKVDEEK 480 SSGEDGGEGL DSDDSSSEDS ESFEKEKSKT SKNGRTVDDL GLPSEDSEDG DFDPAGPDSD 540 KDQNDEPNSD QSDESDFTSD SDDFCSEIAK SCGQDEISGP SSSQIRTVDR TDGSGFGSEP 600 NAENSNLAFM ETELEQDMVL PVSSKRQVEP RAQANTFNES ISVDARLEAY GKSSSDSSDD 660 EEWYGNSTPE KGLEDSETDP LAESPQDGKG FSRRAPVRHH NYEHTPQNVR PGGSVSDQQT 720 EVLCSNSNGS TARNRHFGPA INQKLKVHFK EDPYPSRATK ENLAQELGLT FNQVTKWFSS 780 TRHYARVAAT KKENNIENHT AENNNNNSNT VDSIPLRGSN EIVSVDRNDM ISEERTGQSN 840 LNEGIPLRPD TSCGQSVAVT PMVHPENQGN DSSSNVRTPN AKSAEKMIPG LENSDEARRK 900 AVQRELRKMK TGR

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence Send to blast

MAMPTGGAQS DLYGAEFAGE RVWGEVGVTR PRRRRGAERR LRRRRTAEAA PSFLPCVFPP  60
FSSQPRPRRP RAAADGGARR RRRRTAAEAA EDERDNGGCP RRRLTAVKAI ICMDKTTNSD  120
LILDNDNNGS NAGSAQEPLT ANGKTSGVRN RYKQTVKRGR KGPQISPSKT YPLRSSHSNV  180
RVLRSASKKK NETPIVPTND NTSVQRVVKK RKRTKPLRPA PSRVLRSASE KKNKAHNELL  240
NDGAGVQPAG KKRKVGRPPK EGTPKDDYLI IRKRVRYILN RMNYEQSLIQ AYASEGWKGQ  300
SLEKIRPEKE LERAKVEILR CKSRIREAFQ NLDSLLSEGK LDESMFDSAG EISSEDIFCA  360
VCGSKDVTLK NDIILCDGIC DRGFHQYCLN PPLLAEDIPQ GDEGWLCPAC DCKIDCIDVL  420
NELQEVKLSI HDSWEKVFPE AASFSNGSKQ IDASDLPSDD SADNDYDPAL AQGHKVDEEK  480
SSGEDGGEGL DSDDSSSEDS ESFEKEKSKT SKNGRTVDDL GLPSEDSEDG DFDPAGPDSD  540
KDQNDEPNSD QSDESDFTSD SDDFCSEIAK SCGQDEISGP SSSQIRTVDR TDGSGFGSEP  600
NAENSNLAFM ETELEQDMVL PVSSKRQVEP RAQANTFNES ISVDARLEAY GKSSSDSSDD  660
EEWYGNSTPE KGLEDSETDP LAESPQDGKG FSRRAPVRHH NYEHTPQNVR PGGSVSDQQT  720
EVLCSNSNGS TARNRHFGPA INQKLKVHFK EDPYPSRATK ENLAQELGLT FNQVTKWFSS  780
TRHYARVAAT KKENNIENHT AENNNNNSNT VDSIPLRGSN EIVSVDRNDM ISEERTGQSN  840
LNEGIPLRPD TSCGQSVAVT PMVHPENQGN DSSSNVRTPN AKSAEKMIPG LENSDEARRK  900
AVQRELRKMK TGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	83	RRRRRR
2	79	84	RRRRRT
3	208	213	KKRKRT
4	208	215	KKRKRTKP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269\|PubMed:21951842}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:21951842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB081340	0.0	AB081340.1 Oryza sativa Japonica Group HAZ1 mRNA for PHD-finger family homeodomain protein, complete cds.
GenBank	AK101428	0.0	AK101428.1 Oryza sativa Japonica Group cDNA clone:J033038H23, full insert sequence.
GenBank	AK121314	0.0	AK121314.1 Oryza sativa Japonica Group cDNA clone:J023113A13, full insert sequence.
GenBank	FJ940197	0.0	FJ940197.1 Oryza sativa Japonica Group clone KCS150D11 PHD-finger family homeodomain protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644127.1	0.0	homeobox protein HAZ1 isoform X1
Swissprot	Q8H991	0.0	HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBL	A0A0E0L9M5	0.0	A0A0E0L9M5_ORYPU; Uncharacterized protein
STRING	OPUNC06G07980.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-84	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1. J Integr Plant Biol, 2011. 53(11): p. 869-78 [PMID:21951842]