PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G06470.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 706aa    MW: 76616.9 Da    PI: 6.5096
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G06470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.4e-211671156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     r++ +++t+ q+++Le++F+++++p++++r++L+++lgL+ rq+k+WFqNrR+++k
  OPUNC06G06470.1 16 RKRYHRHTPRQIQQLEAMFKECPHPDENQRAQLSRELGLEPRQIKFWFQNRRTQMK 71
                     688899***********************************************998 PP
2START156.52.1e-492064362206
                      HHHHHHHHHHHHHHHC-TT-EEEE..........EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
            START   2 laeeaaqelvkkalaeepgWvkss..........esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                      +a +a++el+++a+a++  W+ks+          e +n d++ ++f++ ++       ++e +r+sg+v m ++ l   ++d++ +W e ++  
  OPUNC06G06470.1 206 MATRAMDELIRLAQAGDHIWSKSPgggvsggdarETLNVDTYDSIFSKPGGsyrapsINVEGSRESGLVLMSAVALADVFMDTN-KWMEFFPsi 298
                      57899****************************999**********887779****99****************9999999999.********* PP

                      ..EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
            START  78 ..kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                        ka t++v+ +g     + l lm+ el  ++p+vp R++ fvRy+rq ++g w+i+dvSvd +++    ++  R+++lpSg+li +++ng+sk
  OPUNC06G06470.1 299 vsKAHTIDVLVNGmggrsESLILMYEELHIMTPAVPtREVNFVRYCRQIEQGLWAIADVSVDLQRDAHFGAPPLRSRRLPSGCLIADMANGYSK 392
                      ******************************************************************988************************* PP

                      EEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 164 vtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                      vtwveh++++++ p   l+r lv sg+a+ga +w+a+lqr ce+
  OPUNC06G06470.1 393 VTWVEHMEVEEKNPiNVLYRDLVLSGAAFGAHRWLAALQRACER 436
                      **************999*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.84E-20976IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-221078IPR009057Homeodomain-like
PROSITE profilePS5007118.2041373IPR001356Homeobox domain
SMARTSM003894.8E-201477IPR001356Homeobox domain
CDDcd000865.52E-201574No hitNo description
PfamPF000461.8E-181671IPR001356Homeobox domain
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PROSITE profilePS5084845.823196439IPR002913START domain
SuperFamilySSF559612.4E-31197438No hitNo description
CDDcd088751.85E-111200435No hitNo description
SMARTSM002344.2E-35205436IPR002913START domain
PfamPF018528.5E-42206436IPR002913START domain
SuperFamilySSF559612.61E-21453695No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MDFGDEPEGS DSQRRRKRYH RHTPRQIQQL EAMFKECPHP DENQRAQLSR ELGLEPRQIK  60
FWFQNRRTQM KAQHERADNC FLRAENDKIR CENIAIREAL KNVICPTCGG PPVGEDYFDE  120
QKLRMENARL KEELDRVSNL TSKYLGRPFT QLPPATPMTV SSLDLSVGGM GGPSLDLDLL  180
SGGSSGIPFQ LPAPVSDMER PMMAEMATRA MDELIRLAQA GDHIWSKSPG GGVSGGDARE  240
TLNVDTYDSI FSKPGGSYRA PSINVEGSRE SGLVLMSAVA LADVFMDTNK WMEFFPSIVS  300
KAHTIDVLVN GMGGRSESLI LMYEELHIMT PAVPTREVNF VRYCRQIEQG LWAIADVSVD  360
LQRDAHFGAP PLRSRRLPSG CLIADMANGY SKVTWVEHME VEEKNPINVL YRDLVLSGAA  420
FGAHRWLAAL QRACERYASL VALGVPHHIA GVTPEGKRSM MKLSQRMVNS FCSSLGASQM  480
HQWTTLSGSN EVSVRVTMHR STDPGQPNGV VLSAATSIWL PVPCDHVFAF VRDENTRSQW  540
DVLSHGNQVQ EVSRIPNGSN PGNCISLLRG LNASQNSMLI LQESCTDASG SLVVYSPIDI  600
PAANVVMSGE DPSSIPLLPS GFTILPDGRP GSAAGASTSS AGPLAATRGG GGGTGGSVVT  660
VAFQILVSSL PSSKLNAESV ATVNGLITTT VEQIKAALNC SAHGHP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642098.10.0homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A0E0L9560.0A0A0E0L956_ORYPU; Uncharacterized protein
STRINGOPUNC06G06470.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11