PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G05960.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 399aa    MW: 42801.7 Da    PI: 5.2714
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G05960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.5e-181665255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr +k +g+Wv+eIr p++   r r++lg+++t+eeAa+a +aa  +l+g
  OPUNC06G05960.1 16 KYRGVRLRK-WGKWVSEIRLPNS---RERIWLGSYDTPEEAARAFDAAFVCLRG 65
                     8******99.**********933...5*********************999987 PP
2AP255.21.7e-17226275255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +ykGVr +  +g+W+AeIr p++   rkr++lg+++t+e+Aa+a +aa  +l+g
  OPUNC06G05960.1 226 RYKGVRLRQ-WGKWAAEIRLPNS---RKRIWLGSYDTPEKAARAFDAAFICLRG 275
                      7*****998.**********933...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-261580IPR001471AP2/ERF domain
CDDcd000185.48E-221680No hitNo description
SuperFamilySSF541718.5E-181678IPR016177DNA-binding domain
PfamPF008472.4E-101660IPR001471AP2/ERF domain
SMARTSM003802.8E-291684IPR001471AP2/ERF domain
PROSITE profilePS5103221.3771678IPR001471AP2/ERF domain
PRINTSPR003671.4E-91728IPR001471AP2/ERF domain
PRINTSPR003671.4E-93955IPR001471AP2/ERF domain
CDDcd000184.45E-25226287No hitNo description
SuperFamilySSF541714.71E-19226286IPR016177DNA-binding domain
PfamPF008471.7E-10226275IPR001471AP2/ERF domain
PROSITE profilePS5103222.497226285IPR001471AP2/ERF domain
SMARTSM003801.1E-30226291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-26226287IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MSSSSSASAM TTAARKYRGV RLRKWGKWVS EIRLPNSRER IWLGSYDTPE EAARAFDAAF  60
VCLRGGAGAA EAAGINFPDS PPAVVRTSDT QEVHAAAVSH ANRPPSSASA RAMPDAELPL  120
EDQEATVAAD MAAPDVVAGA GNAVAPSSPV NLSFDWSQKP LYSPTSLDLQ RWMTAQEVAE  180
ESIMEADDEG TSDNLWSFHY SPTHSNSEIE PVSFMQASTA AAEMRRYKGV RLRQWGKWAA  240
EIRLPNSRKR IWLGSYDTPE KAARAFDAAF ICLRGAEAIA GLNFPESPPP PPPPAVARTG  300
NLRDQVYAFA VSHANRPPSA EAPAGIVVPA AQVAAEESDD DAVRGNAAPP LVHVAAASLD  360
DWSQFMANPP PMYSPTATTA GSQAIWPHRQ QNPTVRMTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-14221285972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126141e-156CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642230.12e-77ethylene-responsive transcription factor ERF039
RefseqXP_025882167.12e-77ethylene-responsive transcription factor ERF039-like
TrEMBLA0A0E0L8Y80.0A0A0E0L8Y8_ORYPU; Uncharacterized protein
STRINGOPUNC06G05960.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.18e-31ERF family protein