PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC06G05940.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ARF

Protein Properties

Length: 1054aa MW: 116725 Da PI: 6.5963

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC06G05940.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.4	5.4e-23	127	228	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++ OPUNC06G05940.1 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELIAKDLHDISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFI--RD 216 99***************************96555444..8**********************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ OPUNC06G05940.1 217 EKSQLLLGIRRA 228 677789999997 PP
2	Auxin_resp	122.9	2.3e-40	253	335	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m feteds rr++Gt++g+ dldpvrW+nS+Wr+L+ OPUNC06G05940.1 253 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPVRWKNSHWRNLQ 335 79*******************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.49E-44	117	256	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.8E-40	119	242	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.46E-20	126	227	No hit	No description
SMART	SM01019	5.1E-23	127	229	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.0E-21	127	228	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.224	127	229	IPR003340	B3 DNA binding domain
Pfam	PF06507	3.8E-35	253	335	IPR010525	Auxin response factor
Pfam	PF02309	7.8E-9	936	1025	IPR033389	AUX/IAA domain
PROSITE profile	PS51745	24.473	939	1023	IPR000270	PB1 domain
SuperFamily	SSF54277	3.83E-7	957	1018	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0010311	Biological Process	lateral root formation
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1054 aa Download sequence Send to blast
MKDQGSSGVS PGPVEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK 60 ELDNIPGYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN 120 KQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR 180 HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL 240 SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML 300 FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT 360 PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQSA LFPGLSLVQW 420 MAMQQNPQML TAASQTVQSP YLNSSALAMQ DVMGSSNEDP TKRLNAQAQN MVLPNLQVGS 480 KVDHPVMSQH QQQPHQLSQQ QQVQPSQQSS VVLQQHQAQL LQQNAIHLQQ QQEHLQRQQS 540 QPTQQLKAAA TLHSVEQHKL KEQTSGGQVA SQAQMLNQIF PPSSSQLQQL GLPKSPTHRQ 600 GLTGLPIAGS LPQPALTQTS QVQQAAEYQQ ALLQSQQQQQ QLQLQQLSQP EVQLQLLQKI 660 QQQNMLSQLN PQHQSQLIQQ LSQKSQEILQ QQLLQHQFGG SDAGQLKQSQ SQQTPLNHIT 720 GSLTPQQLVR SHSALAESGD PSSSTAPSAS RISPINSLSR ANQGSRNLND MVATPQIDNL 780 LQEIQSKPDN RIKNDIQSKE TIPIHNRHPV SDQLDASSAT SFCLDESPRE GFSFPPVCLD 840 NNVQVDPRDN FLIAENVDAL MPDALLSRGM ASGKGMCALT SGQRDHRDVE NELSSAAFSS 900 QSFGVPDMSF KPGCSSDVAV TDAGMPSQGL WNNQTQRMRT FTKVQKRGSV GRSIDITRYR 960 DYDELRHDLA CMFGIQGQLE DPYRMDWKLV YVDHENDILL VGDDPWEEFV GCVKSIKILS 1020 AAEVQQMSLD GDLGSVPPQT QSCSASDDAN AWRG

Sequence ? help Back to Top

Protein Sequence Length: 1054 aa Download sequence Send to blast

MKDQGSSGVS PGPVEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK  60
ELDNIPGYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN  120
KQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR  180
HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL  240
SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML  300
FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT  360
PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQSA LFPGLSLVQW  420
MAMQQNPQML TAASQTVQSP YLNSSALAMQ DVMGSSNEDP TKRLNAQAQN MVLPNLQVGS  480
KVDHPVMSQH QQQPHQLSQQ QQVQPSQQSS VVLQQHQAQL LQQNAIHLQQ QQEHLQRQQS  540
QPTQQLKAAA TLHSVEQHKL KEQTSGGQVA SQAQMLNQIF PPSSSQLQQL GLPKSPTHRQ  600
GLTGLPIAGS LPQPALTQTS QVQQAAEYQQ ALLQSQQQQQ QLQLQQLSQP EVQLQLLQKI  660
QQQNMLSQLN PQHQSQLIQQ LSQKSQEILQ QQLLQHQFGG SDAGQLKQSQ SQQTPLNHIT  720
GSLTPQQLVR SHSALAESGD PSSSTAPSAS RISPINSLSR ANQGSRNLND MVATPQIDNL  780
LQEIQSKPDN RIKNDIQSKE TIPIHNRHPV SDQLDASSAT SFCLDESPRE GFSFPPVCLD  840
NNVQVDPRDN FLIAENVDAL MPDALLSRGM ASGKGMCALT SGQRDHRDVE NELSSAAFSS  900
QSFGVPDMSF KPGCSSDVAV TDAGMPSQGL WNNQTQRMRT FTKVQKRGSV GRSIDITRYR  960
DYDELRHDLA CMFGIQGQLE DPYRMDWKLV YVDHENDILL VGDDPWEEFV GCVKSIKILS  1020
AAEVQQMSLD GDLGSVPPQT QSCSASDDAN AWRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-164	17	356	47	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin under dark condition. {ECO:0000269\|PubMed:17408882}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK103327	0.0	AK103327.1 Oryza sativa Japonica Group cDNA clone:J033125L14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643020.1	0.0	auxin response factor 16 isoform X1
Swissprot	A3B9A0	0.0	ARFP_ORYSJ; Auxin response factor 16
TrEMBL	A0A0E0L8Y6	0.0	A0A0E0L8Y6_ORYPU; Auxin response factor
STRING	OPUNC06G05940.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9045	33	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	auxin response factor 19

Publications ? help Back to Top
Shen C, et al. OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.). Plant Cell Environ., 2013. 36(3): p. 607-20 [PMID:22913536] Shen C, et al. OsARF16 is involved in cytokinin-mediated inhibition of phosphate transport and phosphate signaling in rice (Oryza sativa L.). PLoS ONE, 2014. 9(11): p. e112906 [PMID:25386911] Shen C, et al. OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.). Plant Sci., 2015. 231: p. 148-58 [PMID:25576000]