PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G05070.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 223aa    MW: 24534.4 Da    PI: 8.7642
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G05070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1853102255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  OPUNC06G05070.1  53 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARIMCG 102
                      69******9.**********8.....334**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.95E-2952112No hitNo description
PROSITE profilePS5103220.69253110IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2053112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-3353111IPR001471AP2/ERF domain
PfamPF008474.2E-1153101IPR001471AP2/ERF domain
SMARTSM003801.2E-3753116IPR001471AP2/ERF domain
PRINTSPR003673.9E-115465IPR001471AP2/ERF domain
PRINTSPR003673.9E-117692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MARLTLPRPR HRPRAHSSLT RALSLSRREH AQIRRRASEN ELETSAMARP QQRYRGVRQR  60
HWGSWVSEIR HPLLKTRIWL GTFETAEDAA RAYDEAARIM CGPRVRTNFP HDVDEAAPPP  120
PPHAAASTSF LSAALVAKLH RFNLASVQAA QRGNSNDDDS STAASSRAVI PSLPAATAAT  180
DGALGNAASP ATAEWSGGFL EEQYVDQMIE ELLDSNFSME ISC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1652114467ATERF1
3gcc_A4e-1652114467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083550.0AK108355.1 Oryza sativa Japonica Group cDNA clone:002-142-C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641438.28e-82ethylene-responsive transcription factor ERF003
SwissprotQ94AW52e-50ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0E0L8L71e-160A0A0E0L8L7_ORYPU; Uncharacterized protein
STRINGOPUNC06G05070.11e-161(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.15e-33ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]