PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G05020.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 364aa    MW: 39249.1 Da    PI: 5.3488
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G05020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.9e-10315362347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +W + E+e l ++v+q+G+g+Wk I    +    gR + ++k++w++ 
  OPUNC06G05020.1 315 KWCALEEETLRKGVEQYGNGNWKDILTNNPdvfIGRKAMDLKDKWRNM 362
                      68888****************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.122308364IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-12308364IPR009057Homeodomain-like
SuperFamilySSF466894.13E-13310363IPR009057Homeodomain-like
CDDcd116602.34E-16314364No hitNo description
PfamPF002491.2E-7315362IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MPRLTPEDAS LLLDHVVGDP SIPAAAAHLA VAAYLAVSAP DFDAAAGALF GRPGGRARRA  60
VEEGGAAALV SDEADAVADQ FEAAVGNSFS QTVLRGLWGD RAAAEERVRE LLAAEWAAIG  120
QSRLEMAAER IVGDGAIETW RAADEVTRAK YRLLAGEQRA REIEGKLGET IPQGNQISTP  180
EVHKVMDALK SSCANLHSVV EDPLPAAKAA ADEVLAARMD KSVDLNVGEV SNQPAACDIA  240
GPSAPANNLD ALRKGTAPSL MDWNPTARTF QWEDSPDPDG SRSPIHRPQL PSPRRTTFSP  300
LQPADNKAKR RKARKWCALE EETLRKGVEQ YGNGNWKDIL TNNPDVFIGR KAMDLKDKWR  360
NMMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4290170.0AY429017.1 Oryza sativa (japonica cultivar-group) ANTHER INDEHISCENCE1 (AID1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641699.10.0uncharacterized protein LOC4340310
TrEMBLA0A0E0L8L20.0A0A0E0L8L2_ORYPU; Uncharacterized protein
STRINGOPUNC06G05020.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.18e-12TRF-like 5