PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G04630.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 329aa    MW: 36012.2 Da    PI: 10.0511
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G04630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.7e-13178222347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT+eE+ l+  + + +G g+Wk I++++ ++Rt+ q+ s+ qky
  OPUNC06G04630.1 178 IWTEEEHRLFMVGLRVFGRGDWKNISKHLVTTRTAAQVSSHAQKY 222
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.68171227IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-10172224IPR009057Homeodomain-like
SuperFamilySSF466891.51E-17172227IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-15174225IPR006447Myb domain, plants
SMARTSM007172.6E-9175225IPR001005SANT/Myb domain
CDDcd001671.45E-8179223No hitNo description
PfamPF002491.9E-10179222IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGSIVIEGWT VSEIEEARTL ITSPNNGGEG GDGEGKKKKP HGRIVMELHE WFPWKTIGQV  60
IGLYMKLKAG TVMVMQSSNK SDANNSISNA DHVSALANGN PVRLEENQPM LNNMGLLFDP  120
LEEMKMENQT DQESKMVVEE EKEVQAQEGL VIKEKEVGMS KIHTNSRHVA PSTKRRVIWT  180
EEEHRLFMVG LRVFGRGDWK NISKHLVTTR TAAQVSSHAQ KYFLKMEARG EAVAPPAKRR  240
RRVTGHQQAA AAAEHAAFSR RRQLPPPFNP FLLPSLVAPV MHRLLPPGTT SQAVAVVTTP  300
APAEAAAGAG GQGASVPQLP WMNGNGMGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237242KRRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028540.0AP002854.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0014B15.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642214.11e-141uncharacterized protein LOC107281238
TrEMBLA0A0E0L8G70.0A0A0E0L8G7_ORYPU; Uncharacterized protein
STRINGOPUNC06G04630.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165491112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.18e-19MYB family protein