PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G04110.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 315aa    MW: 34564.6 Da    PI: 6.8613
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G04110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-121141531155
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      rRR++iN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  OPUNC06G04110.1 114 RRRSKINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 153
                      89*****************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.707103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-16110163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15110158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16113163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-10114153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.78E-11118157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDEQRGRGGF DGLVLLHQQQ QQQEQRRRRE QQEEEEEEEE VRRQMFGAVV GGLAAFPAAA  60
AAAALGQQQQ VDCCGELGGF CDSEAGGSSE PEAAAAGARP RGGSGSKRSR AAERRRSKIN  120
EKMKALQSLI PNSNKTDKAS MLDEAIEYLK QLQLQVQMLS MRNGVYLNPS YLSGALEPAQ  180
ASQMFAALGG NNVTVAHPGT VMPPVNQSSG AHHLFDPLNS PPQNQPPSLI LPSVPSTAIP  240
EPPFHLESSQ SHLRQFQLPG SSEFHIISFF YMFFSVKDGV SWRDNAKASP SITSRKSARK  300
RDELHQERII HVEHQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126141e-155CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881998.11e-143LOW QUALITY PROTEIN: transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like
TrEMBLA0A0E0L8A20.0A0A0E0L8A2_ORYPU; Uncharacterized protein
STRINGOPUNC06G04110.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.18e-27bHLH family protein