PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G02740.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 402aa    MW: 43224.3 Da    PI: 7.8547
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G02740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.2e-1488147155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  ++ Aa+a++ a++k++g
  OPUNC06G02740.1  88 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEDAAARAYDLAALKYWG 147
                      789******************888855566447**********99*************98 PP
2AP236.51.2e-11187235455
              AP2   4 kGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +GV+ ++   rW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  OPUNC06G02740.1 187 RGVSKYRGVARWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 235
                      78877666678999998856...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-1188147IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1588156IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-1489156IPR001471AP2/ERF domain
SMARTSM003802.7E-2389161IPR001471AP2/ERF domain
PROSITE profilePS5103219.17789155IPR001471AP2/ERF domain
PRINTSPR003672.9E-590101IPR001471AP2/ERF domain
PROSITE profilePS5103216.529185243IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-14187244IPR001471AP2/ERF domain
PfamPF008471.4E-7187235IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-15187245IPR016177DNA-binding domain
CDDcd000182.58E-20190245No hitNo description
SMARTSM003804.5E-20191249IPR001471AP2/ERF domain
PRINTSPR003672.9E-5225245IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MATETYGLVK DELLHGIRGG QGRLYCEVKP TAAPAVITAA GGGGGGGGGA KSVKRRKREP  60
STAAMSAVTV AGNSKEAGGS NAANKRSSRF RGVSRHRWTG RFEAHLWDKG TWNPTQKKKG  120
KQVYLGAYNE EDAAARAYDL AALKYWGPTT YTNFPVADYE KELKLMQGVS KEEYLASIRR  180
KSNGFSRGVS KYRGVARWEA RIGRVFGNKY LYLGTYSTQE EAARAYDIAA IEYRGINAVT  240
NFDLSTYIRW LKPPSSAAAA MCLQPHHGGG MGAGADDGLR VLAPVQSYPI SADDDVAGSV  300
YGCGRPLPSP SSSTTALSLL LRSSMFQELV ARQPAVEDDG DDRQLSVLPD ADVKEPPPES  360
EYGEVFSSDD VAAAAAAAYG CSTYELDDSF ALIDDSVWNC FI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15056KSVKRRK
2113121PTQKKKGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126141e-159CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641668.10.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0E0L7Q70.0A0A0E0L7Q7_ORYPU; Uncharacterized protein
STRINGOPUNC06G02740.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-75AP2 family protein