PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC06G02410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 314aa MW: 32938.8 Da PI: 9.4109 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.2e-19 | 118 | 172 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee+F+ +++++ +++ LA++lgL rqV vWFqNrRa+ k OPUNC06G02410.1 118 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTK 172 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 124.8 | 4.1e-40 | 118 | 208 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rLeke ++Lr +lk OPUNC06G02410.1 118 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLR-ALK 208 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-18 | 102 | 168 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.536 | 114 | 174 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-16 | 116 | 178 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.43E-18 | 116 | 183 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.75E-13 | 118 | 175 | No hit | No description |
Pfam | PF00046 | 1.0E-16 | 118 | 172 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 4.6E-5 | 145 | 154 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 149 | 172 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.6E-5 | 154 | 170 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.5E-9 | 174 | 208 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.6E-20 | 174 | 217 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 314 aa Download sequence Send to blast |
MMQPRSLDLG LSLGLGLASQ GSLTSSTTTT TSSPGGSSSP WVAALNSIVG DVRRDQVAHA 60 AASAAVGVGA EELYQGRAST SPDSAAALSS ASGKRERELE RSGSGVDDDD GADGAGGRKK 120 LRLSKDQAAV LEECFKTHST LNPKQKVALA NRLGLRPRQV EVWFQNRRAR TKLKQTEVDC 180 EYLKRWCERL ADENKRLEKE LADLRALKAA PSPASASAMQ PSSSAAATLT MCPSCRRVAT 240 AGAPPPQHQP NHHQQCHPKS NTISSSSSAA VAVAGGNVLP SHCQFFPAAA AAAGDRTSQS 300 TWNAAAPLVT RELF |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 166 | 174 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK105150 | 0.0 | AK105150.1 Oryza sativa Japonica Group cDNA clone:001-103-D07, full insert sequence. | |||
GenBank | AY206864 | 0.0 | AY206864.1 Oryza sativa (indica cultivar-group) homeodomain leucine zipper protein (Hox2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641839.1 | 1e-127 | homeobox-leucine zipper protein HOX2 | ||||
Swissprot | Q5VPE3 | 1e-128 | HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2 | ||||
Swissprot | Q84U86 | 1e-128 | HOX2_ORYSI; Homeobox-leucine zipper protein HOX2 | ||||
TrEMBL | A0A0E0L7K4 | 0.0 | A0A0E0L7K4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G02410.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3842 | 33 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-50 | homeobox from Arabidopsis thaliana |
Publications ? help Back to Top | |||
---|---|---|---|
|