PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G02410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 314aa    MW: 32938.8 Da    PI: 9.4109
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G02410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-19118172256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q  +Lee+F+ +++++ +++  LA++lgL  rqV vWFqNrRa+ k
  OPUNC06G02410.1 118 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTK 172
                      678899***********************************************98 PP

2HD-ZIP_I/II124.84.1e-40118208192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rLeke ++Lr +lk
  OPUNC06G02410.1 118 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLR-ALK 208
                      69*************************************************************************************9.555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-18102168IPR009057Homeodomain-like
PROSITE profilePS5007116.536114174IPR001356Homeobox domain
SMARTSM003891.5E-16116178IPR001356Homeobox domain
SuperFamilySSF466895.43E-18116183IPR009057Homeodomain-like
CDDcd000863.75E-13118175No hitNo description
PfamPF000461.0E-16118172IPR001356Homeobox domain
PRINTSPR000314.6E-5145154IPR000047Helix-turn-helix motif
PROSITE patternPS000270149172IPR017970Homeobox, conserved site
PRINTSPR000314.6E-5154170IPR000047Helix-turn-helix motif
PfamPF021831.5E-9174208IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-20174217IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MMQPRSLDLG LSLGLGLASQ GSLTSSTTTT TSSPGGSSSP WVAALNSIVG DVRRDQVAHA  60
AASAAVGVGA EELYQGRAST SPDSAAALSS ASGKRERELE RSGSGVDDDD GADGAGGRKK  120
LRLSKDQAAV LEECFKTHST LNPKQKVALA NRLGLRPRQV EVWFQNRRAR TKLKQTEVDC  180
EYLKRWCERL ADENKRLEKE LADLRALKAA PSPASASAMQ PSSSAAATLT MCPSCRRVAT  240
AGAPPPQHQP NHHQQCHPKS NTISSSSSAA VAVAGGNVLP SHCQFFPAAA AAAGDRTSQS  300
TWNAAAPLVT RELF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166174RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1051500.0AK105150.1 Oryza sativa Japonica Group cDNA clone:001-103-D07, full insert sequence.
GenBankAY2068640.0AY206864.1 Oryza sativa (indica cultivar-group) homeodomain leucine zipper protein (Hox2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641839.11e-127homeobox-leucine zipper protein HOX2
SwissprotQ5VPE31e-128HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2
SwissprotQ84U861e-128HOX2_ORYSI; Homeobox-leucine zipper protein HOX2
TrEMBLA0A0E0L7K40.0A0A0E0L7K4_ORYPU; Uncharacterized protein
STRINGOPUNC06G02410.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-50homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]