PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G00610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 176aa MW: 19160.9 Da PI: 5.0142 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.1 | 2.9e-17 | 58 | 153 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefel 92 v +s+ + + ++++p +f+ h ++++e +t + ++ g+sW + ++ ++ l +GW+eF+ +n+L++gD +vF+l+ g + e+ OPUNC06G00610.1 58 TAVIAKSHLHPKFQMWIPPRFL--HWLPEPEARTAAVLHSGGKSWPTSY--CGDLKMKKLDSGWSEFAVDNRLRVGDACVFELIaiGVaGGLEF 147 4556678888899********9..7667778889***************..99999999***********************764466677777 PP EEEEE- CS B3 93 vvkvfr 98 v+++r OPUNC06G00610.1 148 QVQILR 153 777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-20 | 52 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.2E-21 | 52 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.39E-20 | 55 | 153 | No hit | No description |
PROSITE profile | PS50863 | 13.112 | 57 | 155 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.4E-6 | 57 | 155 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-15 | 57 | 153 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MQQPDTDPTK LKAKAIIKPK VEPCHDDDEL PAPPPPVSGS DEDWEATTPL TAGNPFFTAV 60 IAKSHLHPKF QMWIPPRFLH WLPEPEARTA AVLHSGGKSW PTSYCGDLKM KKLDSGWSEF 120 AVDNRLRVGD ACVFELIAIG VAGGLEFQVQ ILRGGLPAEV VTSKGVTSDE PIVIVD |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106920 | 0.0 | AK106920.1 Oryza sativa Japonica Group cDNA clone:002-119-B04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643738.1 | 1e-96 | B3 domain-containing protein Os06g0112300 | ||||
Refseq | XP_015643739.1 | 1e-96 | B3 domain-containing protein Os06g0112300 | ||||
Refseq | XP_025882046.1 | 1e-96 | B3 domain-containing protein Os06g0112300 | ||||
Swissprot | Q9LHY9 | 1e-97 | Y6112_ORYSJ; B3 domain-containing protein Os06g0112300 | ||||
TrEMBL | A0A0E0L6X1 | 1e-125 | A0A0E0L6X1_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G00610.1 | 1e-126 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12046 | 19 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 4e-09 | related to vernalization1 1 |
Publications ? help Back to Top | |||
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