PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G00440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 191aa MW: 20826.7 Da PI: 10.2325 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 85.8 | 3.7e-27 | 34 | 137 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+kv tpsdv+k++rlv+pk++ae++ +++ ++ l +ed +g +W+++++y+ +s++yv+tkGW++Fv++++L +gD+v F OPUNC06G00440.1 34 FEKVVTPSDVGKLNRLVVPKHHAEKYfplgpaARSSPAGTVLCFEDARGgdSTWRFRYSYWSSSQSYVITKGWSRFVRDKRLAAGDTVSFC--- 124 99***************************999444557789*****99999***************************************9... PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 r +++l++ +r+ OPUNC06G00440.1 125 RAGARLFIDCRRR 137 4567778887775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.4E-36 | 28 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-27 | 30 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.61E-19 | 32 | 123 | No hit | No description |
SMART | SM01019 | 7.4E-21 | 34 | 138 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-24 | 34 | 137 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.351 | 34 | 138 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MAMTTTIVAW ESRNQQGGGG GGHGGGGERR EHMFEKVVTP SDVGKLNRLV VPKHHAEKYF 60 PLGPAARSSP AGTVLCFEDA RGGDSTWRFR YSYWSSSQSY VITKGWSRFV RDKRLAAGDT 120 VSFCRAGARL FIDCRRRAAA VSPSSPSGAL IKVQLPVVDE KEASCGRRCL RLFGVDLQLR 180 ADAPPALDLQ L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-45 | 30 | 137 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-45 | 30 | 137 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP000616 | 0.0 | AP000616.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0514G12. | |||
GenBank | AP001129 | 0.0 | AP001129.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0644B06. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | KC019172 | 0.0 | KC019172.1 Oryza sativa Indica Group cultivar TN1 insect-resistance protein (BPH29) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642534.1 | 8e-94 | B3 domain-containing protein Os06g0107800 | ||||
Swissprot | Q5VS55 | 7e-95 | Y6078_ORYSJ; B3 domain-containing protein Os06g0107800 | ||||
TrEMBL | A0A0E0L6V2 | 1e-138 | A0A0E0L6V2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G00440.1 | 1e-138 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12947 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61970.1 | 2e-43 | B3 family protein |