PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G00330.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 81aa MW: 9205.42 Da PI: 8.954 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.8 | 5.8e-09 | 33 | 67 | 1 | 37 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 r +WT E++++++a +++ + Wk+I +++g +t OPUNC06G00330.3 33 RESWTDPEHDKFLEALQLFDRD-WKKIEAYVG-SKTV 67 789*****************77.*********.8885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-11 | 21 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.717 | 31 | 81 | IPR017884 | SANT domain |
TIGRFAMs | TIGR01557 | 4.1E-10 | 31 | 68 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 8.6E-5 | 32 | 69 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.9E-4 | 32 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-7 | 33 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.83E-5 | 35 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MTTAPLDSSS PGAGAEDDGG RRVRKPYTIT KSRESWTDPE HDKFLEALQL FDRDWKKIEA 60 YVGSKTVIQP LKLSYHNKLL I |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111672 | 1e-79 | AK111672.1 Oryza sativa Japonica Group cDNA clone:J013156D15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655684.1 | 2e-33 | PREDICTED: protein REVEILLE 6-like | ||||
Swissprot | Q8H0W3 | 3e-27 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A0E0L6T9 | 4e-53 | A0A0E0L6T9_ORYPU; Uncharacterized protein | ||||
STRING | OGLUM06G00320.1 | 2e-42 | (Oryza glumipatula) | ||||
STRING | ORUFI06G00370.1 | 2e-42 | (Oryza rufipogon) | ||||
STRING | ONIVA06G00390.1 | 2e-42 | (Oryza nivara) | ||||
STRING | OBART06G00360.1 | 2e-42 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.1 | 1e-29 | MYB_related family protein |
Publications ? help Back to Top | |||
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