PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G00220.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 352aa    MW: 40266.9 Da    PI: 6.8311
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G00220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.31.8e-54271651129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                      +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++         ++++e++ewyfFs++dkky+tg+r+nrat++g+Wka
  OPUNC06G00220.1  27 VPPGFRFHPTDEELVDYYLRKKVAARRIDL-NVIKDVDLYKIEPWDLQErcringaagSAAEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKA 119
                      69****************************.99**************955888887764455778***************************** PP

              NAM  86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      tg+dk+++++  ++ lvg++ktLv+y+grap+g+k+dW+mheyrle
  OPUNC06G00220.1 120 TGRDKPIYATkqHSLLVGMRKTLVYYRGRAPNGHKSDWIMHEYRLE 165
                      ********98434445****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5920185IPR003441NAC domain
PROSITE profilePS5100559.35127185IPR003441NAC domain
PfamPF023652.1E-2828164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MQAYACTHLA SRSMEMDGSS MSTQQQVPPG FRFHPTDEEL VDYYLRKKVA ARRIDLNVIK  60
DVDLYKIEPW DLQERCRING AAGSAAEEQN EWYFFSHKDK KYPTGTRTNR ATAAGFWKAT  120
GRDKPIYATK QHSLLVGMRK TLVYYRGRAP NGHKSDWIMH EYRLETSETA PPQEEGWVVC  180
RVFKKRLPTT RRDDAPCSWY VDEDAMSPMM ITARSHHAGI TLREQRDLTT NQLQVPHHLL  240
NSTMPAHQLE TSAANSFHSL LVSPYHHQIN THHIAQDDPF FDDMHAVDQA TTTDWRVLDK  300
FVASQLSNDA TNKPAHHYTD EGDILQVSDK QEVAAADYAS TSTSSSQIDP WK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-482218610169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6340760.0JN634076.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642963.10.0NAC domain-containing protein 105
RefseqXP_015642964.10.0NAC domain-containing protein 105
SwissprotQ9FWX21e-102NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A0E0L6S20.0A0A0E0L6S2_ORYPU; Uncharacterized protein
STRINGOPUNC06G00220.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121023039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.14e-92NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]