PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G00030.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 697aa    MW: 77516.5 Da    PI: 6.2684
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G00030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.12.5e-47191491128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp+GfrF+Ptdeelv +yLk k++g+ ++    i++vd+ ++ePwdLp +  +k+++ ew+fF++rd+ky+ g+r+nr+t++gyWkatgkd+ +
  OPUNC06G00030.1  19 LPVGFRFRPTDEELVRHYLKGKIAGRIHPDLLLIPDVDLSTCEPWDLPaMsVIKSDDPEWFFFAPRDRKYPGGHRSNRSTAAGYWKATGKDRLI 112
                      79*************************999888***************5347777888************************************ PP

              NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+  g l+g+kktLvf++grap+g +t W+mheyr 
  OPUNC06G00030.1 113 RSRpAGPLIGIKKTLVFHRGRAPRGIRTAWIMHEYRT 149
                      **988889***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5311170IPR003441NAC domain
PROSITE profilePS5100554.38119170IPR003441NAC domain
PfamPF023659.8E-2620148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MKQGKVEMTP PVAAAGAVLP VGFRFRPTDE ELVRHYLKGK IAGRIHPDLL LIPDVDLSTC  60
EPWDLPAMSV IKSDDPEWFF FAPRDRKYPG GHRSNRSTAA GYWKATGKDR LIRSRPAGPL  120
IGIKKTLVFH RGRAPRGIRT AWIMHEYRTT EPHFQSGKNG SFLLYRLFNK HEQDDTHTPA  180
SNLEQQLHSM SPSPVNPQNG TDAVKVALAS IMKDHETLPS SDLSQLTEIQ NATTTDDADQ  240
SMARSPADDK EQTVAHDDAF LDVLSQLPDL EPEQTYNGFP NITSPMCPYS DDPFVGNLGE  300
QDLSAHFGSI LSEQDLQSLL FTPNYTKMDK HPTGNVGSNP TTSSNNPNNN TLLMDSWRKN  360
GSYQMLPIQH ADDTDATCCS SSINAPQTET SDANLEARAQ SCMVYSGVAE GSHLCNQDQL  420
HSAFNPHMVS QKSGAFCWAG LRTPYPQHWF NTMVEPGRSG MTFSDALKEQ DQEQAPSMQH  480
LTAQDLVDPR QGTAARRIRL VCSVQRASIS QHVSTSHLQS EYEAGSCCNT LNSSNNKKEK  540
VRSEDEVGSC CNTGSSSNNH SKENDDAASQ IMVPLQFIDG EPMHIQCKED TPIQVDPSVE  600
VMDKLQGFSF HEEMLAHANQ PRGTNLKQRL LRVESRNINE NNTPSLETRG RQHAPHIQIW  660
TSSVVRLGWG WQWPALFVMA GSLLLLVGIW KWLNHTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-42131489139Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641780.0AK064178.1 Oryza sativa Japonica Group cDNA clone:002-104-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642953.10.0NAC domain-containing protein 7
TrEMBLA0A0E0L6P40.0A0A0E0L6P4_ORYPU; Uncharacterized protein
STRINGOPUNC06G00030.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.32e-61NAC transcription factor-like 9