PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G24640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 110aa MW: 12483.9 Da PI: 10.0299 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.6 | 3.3e-09 | 24 | 70 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 g WT+ +++ +a + + ++ +W+ Iar+mg ++++ +++ ++ OPUNC05G24640.1 24 GGWTQRQNKQFECALAVYDKEtpdRWHNIARYMGGTKSADEVRRHFE 70 56*****************99************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.4E-8 | 22 | 75 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.55E-11 | 24 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-6 | 24 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.08E-6 | 26 | 73 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MASAAGSKQQ QPMMMLPWSR GGGGGWTQRQ NKQFECALAV YDKETPDRWH NIARYMGGTK 60 SADEVRRHFE HLVEDVARIE SGRVPFPRYS ASSSSRGADD GNRSRYLKYQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-26 | 19 | 110 | 4 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT836452 | 1e-149 | CT836452.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015B15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639028.1 | 3e-62 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 7e-28 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A0E0L668 | 4e-77 | A0A0E0L668_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G24640.1 | 6e-78 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 5e-29 | RAD-like 6 |