PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G24630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 108aa MW: 12317.1 Da PI: 8.4487 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.9 | 4.2e-07 | 27 | 73 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 W + +l+ +a + + ++ +W+ Iar +g g++++++k ++ + OPUNC05G24630.1 27 QWPQKQNKLFEQALAVYDKEtpdRWHNIARAVGGGKSAEDVKRYYEM 73 58888899**********99************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.9E-6 | 24 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-4 | 27 | 81 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.19E-10 | 27 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.27E-5 | 28 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MLSTSLLTSL ASQDLLLDIM AQQARAQWPQ KQNKLFEQAL AVYDKETPDR WHNIARAVGG 60 GKSAEDVKRY YEMLEEDIKH IESGKVPFPA YRCPAAGYQA ERLKHLKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-29 | 28 | 108 | 11 | 92 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241528 | 1e-143 | AK241528.1 Oryza sativa Japonica Group cDNA, clone: J065171E20, full insert sequence. | |||
GenBank | CT836354 | 1e-143 | CT836354.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA043L05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638815.1 | 2e-60 | protein RADIALIS-like 3 | ||||
Swissprot | Q58FS3 | 6e-29 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A0E0L666 | 7e-75 | A0A0E0L666_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G24630.1 | 1e-75 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 4e-31 | RAD-like 6 |
Publications ? help Back to Top | |||
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