PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G24550.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 263aa    MW: 27012.6 Da    PI: 6.9724
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G24550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA633.6e-20149183135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nCgt +TplWR+gp+g+k+LCnaCG++y+k+++
  OPUNC05G24550.1 149 CANCGTASTPLWRNGPRGPKSLCNACGIRYKKEER 183
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.6E-18143194IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-14146184No hitNo description
PROSITE profilePS5011413.916147179IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-17147183IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.28E-15148180No hitNo description
PfamPF003207.2E-18149183IPR000679Zinc finger, GATA-type
PROSITE patternPS003440149174IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MLHHYYSGGA GHHQDVAAAG SPGDMASSTF SLFFPLSKGQ WPPVVEESAA YDDHSTVTTS  60
PSSPSSSSTG SVDCTLSLGT PSSRRAEQVA AAPAANNHGA PAHYSSSLSA ATVSWDATAE  120
SYYCGQQGRP TAGAAKGAIG HDALLDRRCA NCGTASTPLW RNGPRGPKSL CNACGIRYKK  180
EERRAAATAD GNAGCGFTAQ QGRGSTAAKA PPAVTTCGEE TSPYAGGEVA DAPFLAWRLN  240
VVPPPAATAF SVWPECASLY HYN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269|PubMed:19337211}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0734640.0AK073464.1 Oryza sativa Japonica Group cDNA clone:J033044C20, full insert sequence.
GenBankAK1012870.0AK101287.1 Oryza sativa Japonica Group cDNA clone:J033033F09, full insert sequence.
GenBankDQ7845460.0DQ784546.1 Oryza sativa Japonica Group putative NECK LEAF 1 (NL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638999.11e-120GATA transcription factor 15
SwissprotQ6L5E51e-121GAT15_ORYSJ; GATA transcription factor 15
TrEMBLA0A0E0L6580.0A0A0E0L658_ORYPU; Uncharacterized protein
STRINGOPUNC05G24550.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.17e-27GATA transcription factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]