PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G24410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 230aa MW: 25836.4 Da PI: 10.3074 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.5 | 3.1e-10 | 110 | 145 | 22 | 57 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + +s+++++eLA++l+L +qV WF NrR + k+ OPUNC05G24410.1 110 HTRLSRKQKKELADRLNLRISQVDAWFRNRRLRSKQ 145 6789*****************************996 PP | |||||||
2 | HD-ZIP_I/II | 63.1 | 7.1e-21 | 109 | 178 | 20 | 89 |
HD-ZIP_I/II 20 eeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ++++L+ ++K+ela +L+l+ qv+ WF nrR R k++ +E+++++Lk+++++lkeen+rL+ +ve+Lr+ OPUNC05G24410.1 109 NHTRLSRKQKKELADRLNLRISQVDAWFRNRRLRSKQRSTEMECAYLKECFNKLKEENHRLQLKVEQLRS 178 6779****************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0045 | 78 | 150 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.45E-6 | 109 | 144 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-10 | 109 | 151 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.9E-8 | 110 | 145 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.52E-9 | 110 | 154 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.661 | 114 | 146 | IPR001356 | Homeobox domain |
SMART | SM00340 | 1.9E-7 | 144 | 189 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MESTGILNCP SGLKLSVAVP GHALNPFCGK FVMQPNTCKT LISFYRHATK IVVWMGGSGS 60 GCNNENTREL GIHLDLDCPY GREGLPQQGA SMEVQKGEER GGVRHNSSNH TRLSRKQKKE 120 LADRLNLRIS QVDAWFRNRR LRSKQRSTEM ECAYLKECFN KLKEENHRLQ LKVEQLRSTS 180 LQLQLQLHRE RVVTAPTGQQ AGTSAAACIF TSAWPGSNPS RRTWFSPNAL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC098571 | 2e-93 | AC098571.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B10, complete sequence. | |||
GenBank | AP014961 | 2e-93 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638698.1 | 1e-104 | homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A0E0L635 | 1e-171 | A0A0E0L635_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G24410.1 | 1e-172 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19065 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70920.1 | 2e-19 | homeobox-leucine zipper protein 18 |