PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G24330.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 344aa    MW: 37158.2 Da    PI: 8.4178
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G24330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.41.5e-15270295126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +ktelC+ + +tG C+yGd+C+FaHg
  OPUNC05G24330.1 270 FKTELCNKWEETGACPYGDQCQFAHG 295
                      79***********************9 PP
2zf-CCCH23.78.6e-08308333126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykt  Cr  +++G C+yG rC+F H+
  OPUNC05G24330.1 308 YKTQVCRMVLAGGVCPYGHRCHFRHS 333
                      9**********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.4E-19264302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-10266301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601269297IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-10269296IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-12270295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-12303333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-8303335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685307335IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-5307334IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-5308333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MQEALLPPAH PGRFYSDFGP KPFGGGDQRL SSPNLLTNGG DLFYGCYSPF SPTRVLSPPP  60
LPRRAASFSH CSSSSDSVVD DGDGAGAAAA AATEHRLHVA HLALQYQEMA NRFELCLSHL  120
VDAADEAAAL RQENAELRVA NNDLACRIAK FGGRQSSAIA LAGDLRRLRL PKEQSVPALP  180
LPSPPAALMS PVAVPEKQAV LPKSISIRST GYQKLNQGGK HRVSKPVNVG SQRVFVGIDG  240
AEGGEHKVGV KKEEPPMGGL EFEVYNQGMF KTELCNKWEE TGACPYGDQC QFAHGVAELR  300
PVIRHPRYKT QVCRMVLAGG VCPYGHRCHF RHSITPADRF SFGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-22270333467Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063540.0AK106354.1 Oryza sativa Japonica Group cDNA clone:002-102-A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640820.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ6L5G10.0C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0E0L6260.0A0A0E0L626_ORYPU; Uncharacterized protein
STRINGOPUNC05G24330.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-60C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]