 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC05G23750.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GATA |
| Protein Properties |
Length: 199aa MW: 20361 Da PI: 8.0973 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC05G23750.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 63.9 | 1.9e-20 | 76 | 110 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
OPUNC05G23750.1 76 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 110
********************************986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 199 aa
Download sequence Send
to blast |
MLQELAPCTC GMLYGSCGGG CGGAAAHVTT ATQVGGGLPP WDVPSSACPG GGKQDAAGVA 60
TCNKEAPAAG RLPRRCANCD TTSTPLWRNG PRGPKSLCNA CGIRYKKEER RAAAAVAPAP 120
PSLDTGAGYA YCYSRQPAAP AAPQWGCYGQ AAAKSASYAM FGDIVDAADD GPCLSWRLNM 180
MPSSPAFAVG ERPGLFQYY
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250|UniProtKB:Q6L5E5}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC120986 | 1e-114 | AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence. |
| GenBank | AP014961 | 1e-114 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012613 | 1e-114 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
