PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G23480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WOX | ||||||||
Protein Properties | Length: 523aa MW: 54800.7 Da PI: 7.1481 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.4 | 3.8e-16 | 76 | 135 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 ++R+++ +eq+++Le F++ +p ++e++++ +l ++ +++V++WFqNr+ + k OPUNC05G23480.1 76 KPRWNPRPEQIRILEGIFNSgMVNPPRDEIRRIRLQLqeygQVGDANVFYWFQNRKSRTK 135 89*****************99*************************************99 PP | |||||||
2 | Wus_type_Homeobox | 107.7 | 7e-35 | 75 | 137 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe +++sG+++P+++ei+ri+ +L+eyG+++d+NVfyWFQNrk+R ++k OPUNC05G23480.1 75 PKPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGQVGDANVFYWFQNRKSRTKNK 137 689**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.53E-11 | 70 | 141 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.074 | 72 | 137 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.8E-6 | 74 | 141 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-6 | 75 | 138 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.08E-6 | 75 | 137 | No hit | No description |
Pfam | PF00046 | 8.6E-14 | 76 | 135 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MASPNRHWPS MFRSNLACGN IQQQQPDMNG NGCGGGGGGS SSSSFLLSPP AASTGNGKPS 60 LLSSGCEEGT RNPEPKPRWN PRPEQIRILE GIFNSGMVNP PRDEIRRIRL QLQEYGQVGD 120 ANVFYWFQNR KSRTKNKLRA AGHLPHHHGR AALARASPST NIPSAAAAPA PPVTPPRHHH 180 LPAPGVVAAP TTSSSSSSDR SSGSSKSVKP AAALLTSAAQ VGMLPAATAI DLFSPAPAPT 240 SLPLCQLYYH SHPTPLARDD QLTSPESSLL LQWPASQYMP ATELGGVLGS HTQTPAITHP 300 SISPSVLLGL CNEALGQQQE IMDDMSCCSN SKVFGHQYMD MSCTDAVSAV IRDDEKARLG 360 LLHYGIGVTA AAAANPASHH HHHHHLASPV HSPAAAADAS TAAMILPFTT AAATPSNVVA 420 TSSALADQLQ GLLDAGLLQG GAAPPLPSAT VVAVSRDDVT MCTKSTSYSF PAMMHLNVKM 480 FGEAAVLVRY TGETVLVDDS GVTVEPLQQG ATYYVLVTEE AVH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC124143 | 1e-172 | AC124143.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0053D02, complete sequence. | |||
GenBank | AP014961 | 1e-172 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881188.1 | 0.0 | WUSCHEL-related homeobox 12 | ||||
Swissprot | A3B6V0 | 0.0 | WOX12_ORYSJ; WUSCHEL-related homeobox 12 | ||||
TrEMBL | A0A0E0L5S3 | 0.0 | A0A0E0L5S3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G23480.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2666 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 8e-47 | homeobox-3 |
Publications ? help Back to Top | |||
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