PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G22370.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family RAV
Protein Properties Length: 399aa    MW: 41939.5 Da    PI: 10.2063
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G22370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-1273121155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      r +r++lg+f  + eAa+a++ a+++++g
  OPUNC05G22370.1  73 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDVAAQRFRG 121
                      89****9888.8*********......44**********99*************98 PP
2B391.94.6e-29202310191
                      EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                      f+k+ tpsdv+k++rlv+pk++ae+h                  g  + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +
  OPUNC05G22370.1 202 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqipppttsvvadagaGAGECKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHA 295
                      89***************************88888888877777744455999****************************************** PP

                      T-EEEEEE-SSSEE. CS
               B3  77 gDfvvFkldgrsefe 91 
                      gD v F++   + ++
  OPUNC05G22370.1 296 GDAVGFYRAAGKHAQ 310
                      *******76545554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-873121IPR001471AP2/ERF domain
CDDcd000182.10E-2273129No hitNo description
SuperFamilySSF541711.7E-1673129IPR016177DNA-binding domain
SMARTSM003803.2E-2674135IPR001471AP2/ERF domain
PROSITE profilePS5103219.86274129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1974129IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.3E-40193324IPR015300DNA-binding pseudobarrel domain
CDDcd100176.75E-27200303No hitNo description
SuperFamilySSF1019361.96E-28200316IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-26202313IPR003340B3 DNA binding domain
SMARTSM010193.9E-20202318IPR003340B3 DNA binding domain
PROSITE profilePS5086312.153202319IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDSTSCLLDD ASSGASTGKK APAPAAPAAT TSKALQRVGS GASAVMDAAE PGAEADSGGE  60
RRAGGGGGKL PSSKYKGVVP QPNGRWGAQI YERHQRVWLG TFTGEAEAAR AYDVAAQRFR  120
GRDAVTNFRP LAESDPEAAV ELRFLASRSK AEVVDMLRKH TYLEELAQNK RAFAAISPPP  180
PKNPASSPPS SSSAAAAREH LFDKTVTPSD VGKLNRLVIP KQHAEKHFPL QIPPPTTSVV  240
ADAGAGAGEC KGVLLNFEDA AGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KGLHAGDAVG  300
FYRAAGKHAQ LFIDCKVRAK STTTAAAAFL SAVAAAAAPA PAVKAIRLFG VDLLTAAAAP  360
ERRDAAGGAM TKSKRGMDAI AESQPHVVFK KQCIELALT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-5019932711126DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1307250.0AC130725.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0494H05, complete sequence.
GenBankAC1359250.0AC135925.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0560C03, complete sequence.
GenBankAC1364920.0AC136492.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0554F08, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637817.10.0AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H40.0Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A0E0L5C80.0A0A0E0L5C8_ORYPU; Uncharacterized protein
STRINGOPUNC05G22370.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.25e-98related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]