PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G21740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 408aa MW: 41970.7 Da PI: 7.0319 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.8 | 6e-06 | 306 | 346 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L OPUNC05G21740.1 306 ARLRRERVSERLRMLQRLVPGG-----SKMDTATMLDEAASYLKFL 346 599*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.145 | 297 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-11 | 303 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.03E-10 | 303 | 351 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-12 | 303 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-9 | 306 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MYMDAFGWSA PAAPCQPSCP GGDDDDVLLA AVLGASFELH SLVDGGSNGA AAVSSDDAYG 60 LDVDLPSQQM SLLRCQDGLS ALPGDASPTA AAAFLDSVSV DVLPVPAIAG AAHDAGLLDR 120 FAFPNVVETT VKAAASNTAF SGYSSTATTG GGNISSGESN TYTEVASTPC AVSTTQATTL 180 PPSKRKLPEK YPVVGASSTK TTTTTTTSET AAERRSTKRA ASSSITFGGR HGASAAALLG 240 LGRGYEPDTE AIAQVKEMIY RAAAMRPVTL GGGGAAASDP SSAPPPPQRP RRKNVRISSD 300 PQTVAARLRR ERVSERLRML QRLVPGGSKM DTATMLDEAA SYLKFLKSQL EALETLGNGN 360 GNGNLLHHGY YTGSRNATTT TGSSNSTVLA FGRDGIAGYV KSNRNLQL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 288 | 292 | RPRRK |
2 | 306 | 311 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638480.1 | 1e-179 | transcription factor LATE FLOWERING | ||||
Swissprot | A0A0P0WQ90 | 1e-180 | LF_ORYSJ; Transcription factor LATE FLOWERING | ||||
TrEMBL | A0A0E0L557 | 0.0 | A0A0E0L557_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G21740.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1546 | 37 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 2e-29 | bHLH family protein |
Publications ? help Back to Top | |||
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