PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G21440.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 435aa    MW: 48090.9 Da    PI: 9.0266
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G21440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.27.1e-1294146855
              AP2   8 wdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  OPUNC05G21440.1  94 RHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 146
                      799***********888855666447*************************98 PP
2AP251.13.2e-16189240155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++++grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  OPUNC05G21440.1 189 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYKG 240
                      89****************99966...3.6***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.42674154IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-1393155IPR016177DNA-binding domain
SMARTSM003805.7E-1894160IPR001471AP2/ERF domain
PfamPF008471.1E-894146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-1394155IPR001471AP2/ERF domain
CDDcd000185.99E-24189248No hitNo description
SuperFamilySSF541712.94E-17189249IPR016177DNA-binding domain
PfamPF008474.1E-11189240IPR001471AP2/ERF domain
SMARTSM003801.7E-26190254IPR001471AP2/ERF domain
PROSITE profilePS5103218.979190248IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-17190248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MDHSIMMVKS EIENYSGSSP AMIINVPESG AEAGPVVRRR RREPSLLAPI NGDTSGGGIG  60
KTSLTGITVK RSSRFRGVSR FRARRDDKKI WSCRHRWTGR FEAHLWDKNS WNPTQRKKGK  120
QVYLGAYDEE EAAARAYDLA ALKYWGPTTY TNFPVMDYEK ELKIMENLTK EEYLASLRRK  180
SSGFSRGVSK YRGVARHHQN GRWEARIGRV FGNKYLYLGT YSTQEEAARA YDIAAIEYKG  240
VNAVTNFDLR SYITWLKPTP APVAMNPAEA LAMQIPADHF LPMETQMMMM LPQSNPFISD  300
HNAQSLLGGG DGGSSSSNNQ EASMMISPSG SSRKRGSSTA LSLLLKSSMF RQLVEKNSDA  360
GEENGGEMRE PGAHPGEGYE YHNFFQGDAA PDMDMRDLLL SSGGVHAASS SAGFEGDVAC  420
YGDGERTAWS GFGSM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120PTQRKKGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851120.0AY685112.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D4 (AP2D4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881488.10.0AP2-like ethylene-responsive transcription factor PLT1
TrEMBLA0A0E0L5220.0A0A0E0L522_ORYPU; Uncharacterized protein
STRINGOPUNC05G21440.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-74AP2 family protein