PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G20130.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 309aa    MW: 32395 Da    PI: 8.927
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G20130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.46.3e-3161159398
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas.nsssg.....ka 90 
                      g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+++i++l+ ++++++ +  a++ ss+as + + g     + 
  OPUNC05G20130.1  61 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLINAAQAEIDKLPPLQFPPHDHDLAAAASSMASpFANGGdhhhhA- 153
                      78*************************************************************999993332222222222122222432211. PP

              TCP  91 aksaaksk 98 
                        +aa+s 
  OPUNC05G20130.1 154 --AAASSM 159
                      ..222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.56462120IPR017887Transcription factor TCP subgroup
PfamPF036342.0E-2762144IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MLFKMISGNT NNTNEELGGR KVAEQPSGSA VAAAKASAVA SSRHWSASTE SRIVRVSRVF  60
GGKDRHSKVK TVKGLRDRRV RLSVPTAIQL YDLQDRLGLS QPSKVVDWLI NAAQAEIDKL  120
PPLQFPPHDH DLAAAASSMA SPFANGGDHH HHAAAASSML EDGDKAATNN GVGGGGMKAF  180
MSLSNSLGLL NATMPGTLAA HHHHHHHHGA YYAAAAESWG NGGNAHHHGV SHGVSPSPHV  240
AAAAAHNSPF PSLLSLAPGS HQFVFYSPEG GGFAMKEATE QFPVDNLDHS QGQLTLSSAR  300
SFLHSGSQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2067121155Putative transcription factor PCF6
5zkt_B2e-2067121155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1306040.0AC130604.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1155G07, complete sequence.
GenBankAK0699380.0AK069938.1 Oryza sativa Japonica Group cDNA clone:J023038I07, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankGQ2294840.0GQ229484.1 Oryza sativa Japonica Group TCP transcription factor (TCP11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637968.11e-123transcription factor TCP13
TrEMBLA0A0E0L4K70.0A0A0E0L4K7_ORYPU; Uncharacterized protein
STRINGOPUNC05G20130.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.15e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5