PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G18800.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 444aa    MW: 50319.4 Da    PI: 6.1048
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G18800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-1658105148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT +Ed +l +++k++G ++Wk++ +  g+ R++k+c++rw ++l
  OPUNC05G18800.1  58 KGPWTSWEDSILEKYIKKHGERNWKLVQKNTGLLRCGKSCRLRWMNHL 105
                      79******************************99************97 PP
2Myb_DNA-binding45.32e-14111154146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ ++++++ ++G++ W+  a +++ gRt++++k++w++
  OPUNC05G18800.1 111 KGAFSKEEENKIINLHLKMGNK-WSQMAVYLP-GRTDNEIKNYWNT 154
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.92253109IPR017930Myb domain
SuperFamilySSF466891.09E-2656152IPR009057Homeodomain-like
SMARTSM007174.8E-1457107IPR001005SANT/Myb domain
PfamPF002499.1E-1558105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2159112IPR009057Homeodomain-like
CDDcd001678.01E-1260105No hitNo description
SMARTSM007173.3E-14110158IPR001005SANT/Myb domain
PROSITE profilePS5129416.802110160IPR017930Myb domain
PfamPF002495.0E-13111154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-24113158IPR009057Homeodomain-like
CDDcd001673.34E-10113154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MAFRFAGGVT PFHDFRKMHG SDSDPDSDRT HRYMSNSDDE SFVDKDCRRG TVAPLLKKGP  60
WTSWEDSILE KYIKKHGERN WKLVQKNTGL LRCGKSCRLR WMNHLRPNLK KGAFSKEEEN  120
KIINLHLKMG NKWSQMAVYL PGRTDNEIKN YWNTRIKKCK NNRSLLYPDD VCDHALDKDQ  180
RESADPSGTE KLTNNQMYVT GHLEDTCMYS APQFSDASIS NILDRRLASK DYDSIEDQRN  240
RIEVAAEYEI PLPVLKAANN DIFPSGALFA NHGLSNGNFS TSRSTSGALK SELPLIQFDP  300
NNQAIYSIAS ATQLTNFALL PTNSEHMASW KNDLSEELLN NTDVLNYVVM KEELSGGSLS  360
PAVSMPCEAL ADSSKPPLSH TSMTTSNELV VPRYERDVPP LQDDFTSYFH LNDINPSIFE  420
DTNELFMENK LNTKGEPVMT CYVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28541583106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankD886210.0D88621.1 Oryza sativa mRNA for OSMYB5, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881555.10.0transcription factor GAMYB
TrEMBLA0A0E0L4460.0A0A0E0L446_ORYPU; Uncharacterized protein
STRINGOPUNC05G18800.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154081018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.12e-55myb domain protein 33