PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G17670.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 231aa    MW: 24837.3 Da    PI: 7.1423
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G17670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-1764112355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+Wv+e r+p   + + kr++lg+fg+a +Aa a+++a+ ++ g
  OPUNC05G17670.1  64 YRGVRQRP-WGKWVSEFREP---N-YgKRHWLGTFGSAVDAALAYDKAAVAILG 112
                      9*******.*******8887...2.36*********************988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.4E-2863120IPR001471AP2/ERF domain
SMARTSM003804.8E-3263126IPR001471AP2/ERF domain
PROSITE profilePS5103220.73263120IPR001471AP2/ERF domain
PfamPF008472.6E-1164109IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-2064121IPR016177DNA-binding domain
CDDcd000183.93E-2764122No hitNo description
PRINTSPR003672.4E-126475IPR001471AP2/ERF domain
PRINTSPR003672.4E-12102122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MTAGEGDVGM KREGMEVEKA PVAAASSAGR KKKQARAKNG ATPDAAGGAR GRAARRAKRG  60
PGSYRGVRQR PWGKWVSEFR EPNYGKRHWL GTFGSAVDAA LAYDKAAVAI LGPRAVLNFP  120
AAITPSAAIA APEQRETPCC SPAAAAAVFE ERDVKPVVLP MPAILQVGGV EAMARPWDWE  180
WGASWPEQEM FECLDDIAVY LDVDAVMKTR DCKVEELNAD IVDSPLWTLS D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1863124567ATERF1
3gcc_A6e-1863124567ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098550.0AK109855.1 Oryza sativa Japonica Group cDNA clone:002-148-G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638470.11e-86dehydration-responsive element-binding protein 2D
RefseqXP_015638471.11e-86dehydration-responsive element-binding protein 2D
SwissprotQ65WX11e-87DRE2D_ORYSJ; Dehydration-responsive element-binding protein 2D
TrEMBLA0A0E0L3Q21e-164A0A0E0L3Q2_ORYPU; Uncharacterized protein
STRINGOPUNC05G17670.11e-165(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141022226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.22e-13DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]