PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G16540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 256aa MW: 27356.8 Da PI: 8.6506 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.7 | 6.7e-06 | 79 | 132 | 4 | 54 |
HHHHHHHHHHHHHHHH......HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsa......feeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++ f+eL +l + + ++ +K++iL A + +++L OPUNC05G16540.1 79 TKACREKLRRDRLNERhvshfqFSELSAILEPG---KPPRADKVSILSDAARLLSQL 132 5678***********77777779*********9...89***************9999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.81E-8 | 67 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.20E-5 | 79 | 137 | No hit | No description |
SMART | SM00353 | 0.0058 | 81 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-8 | 82 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MSCGGGGQSG WLLEYGLVEE EIQGSDFIYM VDDPAAVSSV ILGFDVPRKE DGGGSSSGGQ 60 DNSASKKRSR PESSAPPGTK ACREKLRRDR LNERHVSHFQ FSELSAILEP GKPPRADKVS 120 ILSDAARLLS QLRAEAQKLK SSNESLQDSI KSLKAEKSEL RDEKTRLKAE RERLEQMLKG 180 VGAAAAAAPA PFVPRHAAAV AAAPAYHPAA AAAFAQAGGK YVPYATSYAP PAAFWQWIPP 240 TSLDTSKDPV MWPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063498 | 0.0 | AK063498.1 Oryza sativa Japonica Group cDNA clone:001-116-D07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637537.1 | 1e-143 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 4e-58 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A0E0L3A6 | 0.0 | A0A0E0L3A6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G16540.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9386 | 31 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 5e-52 | bHLH family protein |