PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G16530.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 612aa MW: 65778.5 Da PI: 9.0012 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.1 | 2e-10 | 391 | 428 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++++ LAk++gLt +qV++WF N R + OPUNC05G16530.2 391 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 428 554459******************************88 PP | |||||||
2 | BELL | 94.1 | 1.2e-30 | 258 | 327 | 3 | 72 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +e q +k++L+sl+e V+krYkqy++qlq+v+ssFe+vagl +a+p++s+Al+++S+hF+ Lk +i +q+ OPUNC05G16530.2 258 AEQQWRKTRLISLMEDVCKRYKQYYQQLQAVVSSFETVAGLSNAAPFASMALRTMSKHFKYLKGMILNQL 327 58899*************************************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.7E-34 | 186 | 325 | IPR006563 | POX domain |
Pfam | PF07526 | 2.7E-36 | 191 | 323 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.455 | 369 | 432 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-11 | 372 | 436 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.09E-14 | 372 | 433 | No hit | No description |
SuperFamily | SSF46689 | 4.71E-17 | 374 | 439 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.0E-29 | 375 | 436 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.5E-19 | 389 | 428 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048457 | Biological Process | floral whorl morphogenesis | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 612 aa Download sequence Send to blast |
MCPYPSPSPT KYKTPSSISG RSLTSACVRP PPSVGAMSSA AGGGYGGGGG EHQQQHHHQQ 60 QLLLGQAAGQ LYHVPQHSRR EKLRFPPDHP AESSPPPGSW PLPPAFYSYA SSSSSYSPHS 120 PTLAHAQMVA HGMPPGTATS GGAQIPSQNF ALSLSSASSN PPPTPRRQFG GGGNSGGAAG 180 PYGPFTGYAA VLGRSRFLGP AQKLLEEICD VGGRPAQLDR GSDEGLLDVD AMDAAGSVDH 240 EMDGRDRAAA DAVTVSGAEQ QWRKTRLISL MEDVCKRYKQ YYQQLQAVVS SFETVAGLSN 300 AAPFASMALR TMSKHFKYLK GMILNQLRNT GKGATKDGLG KEETANFGLM GSGAGLLRGN 360 NVNSFSQPHN IWRPQRGLPE RAVSVLRAWL FEHFLHPYPT DSDKQMLAKQ TGLTRNQVSN 420 WFINARVRLW KPMVEEIHNL EMRQLQKNPS LDKNQLSMQH TQHSSDSSGK PCDPSNSLQG 480 QSSSMTRNHS VSASRQMEDG LSQMPHDISG QVSFAYNGLA THHNIVMAHH HQPDLIGTGG 540 AANAGGVSLT LGLHQNNRAY ISEPLPAALP LNLAHRFGLE DVSDAYVMSS FGGQDRHFTK 600 EIGGHLLHDF VG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 3e-17 | 378 | 435 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 3e-17 | 378 | 435 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 4e-17 | 378 | 436 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 4e-17 | 378 | 436 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100916 | 0.0 | AK100916.1 Oryza sativa Japonica Group cDNA clone:J023133E06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006654500.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A0E0L3A4 | 0.0 | A0A0E0L3A4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G16530.2 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2528 | 38 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 2e-73 | TALE family protein |