PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G16530.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 576aa    MW: 62088.3 Da    PI: 8.4739
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G16530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.21.8e-103553921954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  OPUNC05G16530.1 355 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 392
                      554459******************************88 PP
2BELL94.21.1e-30222291372
             BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +e q +k++L+sl+e V+krYkqy++qlq+v+ssFe+vagl +a+p++s+Al+++S+hF+ Lk +i +q+
  OPUNC05G16530.1 222 AEQQWRKTRLISLMEDVCKRYKQYYQQLQAVVSSFETVAGLSNAAPFASMALRTMSKHFKYLKGMILNQL 291
                      58899*************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.7E-34150289IPR006563POX domain
PfamPF075262.5E-36155287IPR006563POX domain
PROSITE profilePS5007112.455333396IPR001356Homeobox domain
CDDcd000864.13E-14336397No hitNo description
SMARTSM003891.4E-11336400IPR001356Homeobox domain
SuperFamilySSF466894.28E-17338403IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-29339400IPR009057Homeodomain-like
PfamPF059205.1E-19353392IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MSSAAGGGYG GGGGEHQQQH HHQQQLLLGQ AAGQLYHVPQ HSRREKLRFP PDHPAESSPP  60
PGSWPLPPAF YSYASSSSSY SPHSPTLAHA QMVAHGMPPG TATSGGAQIP SQNFALSLSS  120
ASSNPPPTPR RQFGGGGNSG GAAGPYGPFT GYAAVLGRSR FLGPAQKLLE EICDVGGRPA  180
QLDRGSDEGL LDVDAMDAAG SVDHEMDGRD RAAADAVTVS GAEQQWRKTR LISLMEDVCK  240
RYKQYYQQLQ AVVSSFETVA GLSNAAPFAS MALRTMSKHF KYLKGMILNQ LRNTGKGATK  300
DGLGKEETAN FGLMGSGAGL LRGNNVNSFS QPHNIWRPQR GLPERAVSVL RAWLFEHFLH  360
PYPTDSDKQM LAKQTGLTRN QVSNWFINAR VRLWKPMVEE IHNLEMRQLQ KNPSLDKNQL  420
SMQHTQHSSD SSGKPCDPSN SLQGQSSSMT RNHSVSASRQ MEDGLSQMPH DISGQVSFAY  480
NGLATHHNIV MAHHHQPDLI GTGGAANAGG VSLTLGLHQN NRAYISEPLP AALPLNLAHR  540
FGLEDVSDAY VMSSFGGQDR HFTKEIGGHL LHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-17342399158Homeobox protein Meis1
4xrs_B3e-17342399158Homeobox protein Meis1
5bng_A4e-17342400159Homeobox protein Meis2
5bng_B4e-17342400159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009160.0AK100916.1 Oryza sativa Japonica Group cDNA clone:J023133E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654500.10.0PREDICTED: BEL1-like homeodomain protein 9
TrEMBLA0A0E0L3A40.0A0A0E0L3A4_ORYPU; Uncharacterized protein
STRINGOPUNC05G16530.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.17e-74TALE family protein