PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G16320.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 316aa    MW: 34230.5 Da    PI: 7.16
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G16320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.5e-084084244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g+W++eE + + +a + l  +   +W+++a  ++ g+t  ++  ++
  OPUNC05G16320.1 40 GAWSQEENKVFEQALAALDRNdpeRWERVALLLP-GKTVADVMTHY 84
                     79*****************99*************.********999 PP
2Myb_DNA-binding45.61.6e-14155199347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky
  OPUNC05G16320.1 155 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 199
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.43488IPR017877Myb-like domain
SMARTSM007178.8E-73890IPR001005SANT/Myb domain
PfamPF002491.8E-54084IPR001005SANT/Myb domain
SuperFamilySSF466892.3E-94095IPR009057Homeodomain-like
CDDcd001675.02E-64184No hitNo description
PROSITE profilePS5129417.568148204IPR017930Myb domain
SuperFamilySSF466891.44E-17150204IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-17151202IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.1E-12152198IPR009057Homeodomain-like
SMARTSM007175.8E-13152202IPR001005SANT/Myb domain
PfamPF002497.4E-12155199IPR001005SANT/Myb domain
CDDcd001672.14E-11155200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MMKESYMEVL PPAPAHYFVG QAAAAAAAGG WFLQDRRGGG AWSQEENKVF EQALAALDRN  60
DPERWERVAL LLPGKTVADV MTHYDDLEND VCFIEAGLVP FPHYGAGVGG SPPSGFTLDW  120
DGGDDPAGLG FKRSCYMVGG KRARGPDQER KKGVPWTEEE HKLFLMGLKK YGRGDWRNIS  180
RNFVTSRTPT QVASHAQKYF IRLNSGGKDK RRSSIHDITT VNLPDDDHGN PSPSPPSVLT  240
AHSSAAAGGP VISEQFGVLV DSKPPPPLGR GGGHHFMPHP YAQVKIEARN SHVAGGGRLD  300
DSVLLQMQCG QLQPLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1536104573RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0681380.0AK068138.1 Oryza sativa Japonica Group cDNA clone:J013135D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654489.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H78e-82DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0E0L3790.0A0A0E0L379_ORYPU; Uncharacterized protein
STRINGOPUNC05G16320.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-82MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]