PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G16000.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 385aa    MW: 43113.1 Da    PI: 8.9506
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G16000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-074793347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +W++ Ed+ +  a   ++ +   +W+++a++++ gR++ ++ ++++ +
  OPUNC05G16000.1 47 PWSKAEDKVFESALVAFPEHthnRWALVASRIP-GRSAHEVWEHYRVL 93
                     8**************99999999**********.***********975 PP
2Myb_DNA-binding43.66.7e-14135179347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++++ +++G g+W+ I+r   k+Rt+ q+ s+ qk+
  OPUNC05G16000.1 135 PWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKF 179
                      8******************************************98 PP
3Myb_DNA-binding22.72.2e-07226272347
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      +W++ Ed+ +  a   +  +   +W+++a++++ gR++ ++ +++q +
  OPUNC05G16000.1 226 PWSKVEDKVFESALVTFLEHthnRWALVASRLP-GRSAHDVWEHYQVL 272
                      8**********997654444466**********.************76 PP
4Myb_DNA-binding43.19.9e-14317361347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++++ +++G g+W+ I+r   k+Rt+ q+ s+ qk+
  OPUNC05G16000.1 317 AWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKF 361
                      7******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.4224098IPR017930Myb domain
SMARTSM007173.0E-74496IPR001005SANT/Myb domain
SuperFamilySSF466892.92E-1146101IPR009057Homeodomain-like
CDDcd001674.73E-64794No hitNo description
PfamPF002491.5E-64793IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-64791IPR009057Homeodomain-like
PROSITE profilePS5129419.617128184IPR017930Myb domain
SuperFamilySSF466892.0E-17130184IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-16132183IPR006447Myb domain, plants
SMARTSM007172.8E-10132182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-11134175IPR009057Homeodomain-like
CDDcd001673.21E-10135180No hitNo description
PfamPF002492.6E-10135178IPR001005SANT/Myb domain
SMARTSM007171.6E-6223275IPR001005SANT/Myb domain
SuperFamilySSF466892.26E-10225280IPR009057Homeodomain-like
PfamPF002499.1E-6226272IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-6226271IPR009057Homeodomain-like
CDDcd001678.01E-6226273No hitNo description
PROSITE profilePS500906.458226273IPR017877Myb-like domain
PROSITE profilePS5129417.999310366IPR017930Myb domain
SuperFamilySSF466895.87E-17313366IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-16314365IPR006447Myb domain, plants
SMARTSM007177.1E-10314364IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-10316357IPR009057Homeodomain-like
PfamPF002493.7E-10317360IPR001005SANT/Myb domain
CDDcd001675.90E-10317362No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MCGPIEDMHY DPVQSRFASI PSMAFYCGDM GGSSSSWTAP PVPSSRPWSK AEDKVFESAL  60
VAFPEHTHNR WALVASRIPG RSAHEVWEHY RVLVDDVDLI ERGMVASPGC WDDCAGRGGA  120
QGASRGGDER RRGVPWTEEE HRLFLEGLEK YGRGDWRNIS RWSVKTRTPT QVASHAQKFF  180
IRQANTSNRG DSKRKSIHDI TALMRGSSSS WAAAMMAAPP VPSSRPWSKV EDKVFESALV  240
TFLEHTHNRW ALVASRLPGR SAHDVWEHYQ VLVDDVNLIE RGMVASPVYW DDADGRVGAQ  300
GGRSRGGGGD ECRRGVAWTE EEHRLFLEGL EKYGRGDWRN ISRWSVKTRT PTQVASHAQK  360
FFIRQASAGS RSDSKRKSIH DITAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-1344109772RADIALIS
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300308GGRSRGGGG
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-126CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638220.11e-107transcription factor DIVARICATA
SwissprotQ8S9H71e-46DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0E0L3330.0A0A0E0L333_ORYPU; Uncharacterized protein
STRINGOPUNC05G16000.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-43MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]