PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G15940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 312aa MW: 32941.7 Da PI: 6.4242 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.1 | 7.9e-38 | 38 | 92 | 6 | 60 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ OPUNC05G15940.1 38 PNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 92 68***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-29 | 34 | 92 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.6E-32 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.854 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 40 | 76 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MLSSHCESML AYAAAAAGRR AVVVDHHRRY RPNVEVAPNC PRCDSPNTKF CYYNNYSLSQ 60 PRYFCKGCRR YWTKGGSLRN VPVGGGCRKN RRGKAVRAMV VADASETRGG AAAFSHRFHG 120 PVRPDMLLEG MVGSTASAGL GQQQPRVPDE KPAAADGSTI DLALLYAKFL NHQPMAEHGG 180 AGLPESVDTS SGSSSDHTSP AGAQPAAAYG PGQDGLGELI STEHGAAAMA QCAQALGELN 240 FSVDQSCYTS LGLSTDGGDL ILPSTLDQHA KYEPFDSLPE DALSLHDIIS GDDDVWSNAL 300 GCQGLEAALC RP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006654467.1 | 0.0 | PREDICTED: uncharacterized protein LOC102700144 | ||||
TrEMBL | A0A0E0L323 | 0.0 | A0A0E0L323_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G15940.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2659 | 36 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 4e-36 | Dof family protein |